View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16786_high_1_N (Length: 1186)
Name: NF16786_high_1_N
Description: NF16786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16786_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 42935901 - 42935391
Alignment:
| Q |
19 |
gtggctggaatttcaatgaagatggattggaacttgtgcctgtattcccaaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaaga |
118 |
Q |
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| T |
42935901 |
gtggctggaatttcaatgaagatggattggaacttgtgcctgtattcccaaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaaga |
42935802 |
T |
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| Q |
119 |
agaaaaagtgatccaagaggatgatgttgttacagcatcaggaactgtgatggagccaaagaccaatactactgatgt---tgatcatgaaaatgttggt |
215 |
Q |
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| T |
42935801 |
agaaaaagtgatccaagaggatgctgttgttacagcatcaggaactgtgatggagccaaagaccaatacttctgatgtggttgatcatgaaaatgtcggt |
42935702 |
T |
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| Q |
216 |
ggtgttgttaagaaccgcgaagctacgttggcaacgttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaa |
315 |
Q |
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| T |
42935701 |
ggtgttgttaagaaccgtgaagctacgttggcaacgttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaa |
42935602 |
T |
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| Q |
316 |
ttggtggagaggagattcatgtggctgaaagtgatgagaaaatggtgcaagagatctctaagttgaggacagaattggaaaatgagaagaagaagaactt |
415 |
Q |
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| T |
42935601 |
ttggtggagaggagattcatgtggctgaaagtgatgagaaaatggtgcaagagatctctaagttgaggacagaattggaaaatgagaagaagaagaactt |
42935502 |
T |
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| Q |
416 |
gcagctggagatgcagctggagaatatcaagcttcacctaatttcctctgctgctaatagtcctactagttagttaacttgataatatgtgtttctacat |
515 |
Q |
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| T |
42935501 |
gcagctggagatgcagctggagaatatcaagcttcacctaatttcctctgctgctaatagtcctactagttaattaacttgataatatgtgtttctacat |
42935402 |
T |
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| Q |
516 |
aatatctctga |
526 |
Q |
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| T |
42935401 |
aatatctctga |
42935391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 568 - 1159
Target Start/End: Complemental strand, 42935391 - 42934806
Alignment:
| Q |
568 |
atatgttgtatttcttaaagttagatactctactggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
667 |
Q |
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| T |
42935391 |
atatgttgtatttcttaaatttagatactctaccggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
42935292 |
T |
|
| Q |
668 |
gcgcagttcaacggattataagatagttggatctaaattttaataaatttagatgaaacggccctatagagaccgtcacatcaattttaataaatttaga |
767 |
Q |
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| T |
42935291 |
gcacagtgcaacggattataagatagttggatctaaattttaataaatttagatgaaacggccctatagagaccgtcacatcaattttaataaatttaga |
42935192 |
T |
|
| Q |
768 |
tccaacggtcctacagagaccgttgcatctgtagcaagcgttcaatatgaacttctcaaatactagatggcaggggatagttttattttaacagagaaat |
867 |
Q |
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| T |
42935191 |
tccaacggtcctacagagaccgttgcatctgtagcaagcgttcaatatgaacttctcaaatactagatggcaggggatagttttattttaacagagaaat |
42935092 |
T |
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| Q |
868 |
gaaaaatcggaaataaacgttgttgaagccg---------gnnnnnnnnnnnnctccaatcaataacgtagatgcaataggaaagagcaagaaaaattct |
958 |
Q |
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| T |
42935091 |
gaaaaatcggaaataaacgttgttgaagccgcaaaaaaaaaaaaaaaaaaaaactccaatcaataacgtagatgcaataggaaagagcaagaaaaattct |
42934992 |
T |
|
| Q |
959 |
gaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatctagtgccaatctaagtctaattaacaactagaaaaaccagcaagaaaaa |
1058 |
Q |
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| T |
42934991 |
gaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatctagtgccaatctaagtctaattaacaact-------------agaaaaa |
42934905 |
T |
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| Q |
1059 |
ttctgcaatcttaagctaatttgaaagaataaacaaattgctgctacacctttccaatcaatgcagtcctctgcctattcttttattactgccttgccta |
1158 |
Q |
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| T |
42934904 |
ttctgcaatcttaagctaatttgaaagaataaacaaa--gctgctacacctttccaatcaatgcagtcctctgcctattcttttattactgccttgccta |
42934807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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