View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16786_high_2 (Length: 370)
Name: NF16786_high_2
Description: NF16786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16786_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 42824892 - 42824685
Alignment:
| Q |
18 |
cctgtgattattgctactttaccttcaagcctgcacaaagagagatttgagaatttattcgtaaaaatataatatagttgaaagaattcaatatatatat |
117 |
Q |
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| T |
42824892 |
cctgtgattattgctactttaccttcaagcctgcacaaagagagatttgagattttattcgtaaaaatataatatagttgaaagaattcaatatata--- |
42824796 |
T |
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| Q |
118 |
agtactctactccacaatatagttaccttttgccaattgaagccatggaagatgatttttcccaactataggagtagaccactagagtttgaatgctttt |
217 |
Q |
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| T |
42824795 |
-gtactctactccacaatatatttaccttttgccaattgaagccatggaagatgatttttcccaactataggagtagaccactagagtttgaatgctttt |
42824697 |
T |
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| Q |
218 |
tatagtagcaga |
229 |
Q |
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|||||||||||| |
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| T |
42824696 |
tatagtagcaga |
42824685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 248 - 369
Target Start/End: Complemental strand, 42824660 - 42824543
Alignment:
| Q |
248 |
aaatgcatattcattaatagttgcggatactaatattaattagaacaactaataataatgaacctaccgaccaaaaaggttttgtgcttagattcaaaat |
347 |
Q |
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| T |
42824660 |
aaatgcatattcattaatagttgcggatacta---ttaattagaacaactaataataatgaacctaccgaccaaaa-ggttttgtgcttagattcaaaat |
42824565 |
T |
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| Q |
348 |
tgtggaattaggtgaactacta |
369 |
Q |
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| T |
42824564 |
tgtggaattaggtgaactacta |
42824543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 42821251 - 42821216
Alignment:
| Q |
21 |
gtgattattgctactttaccttcaagcctgcacaaa |
56 |
Q |
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| T |
42821251 |
gtgattattgctactttaccttcaagcctgcgcaaa |
42821216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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