View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16786_high_3 (Length: 368)
Name: NF16786_high_3
Description: NF16786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16786_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 30964657 - 30965016
Alignment:
| Q |
1 |
tcatcctcatcttctgcaagcaaacaatattacctgatgggaaatttaaatagaaaaacatattcacacttcaaaggacatgctcgtccnnnnnnn-gga |
99 |
Q |
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| T |
30964657 |
tcatcctcatcttctgcaagcaaacaatattacctgatgggaaatttaaatagaaaaacatattcacacttcaaaggacatgcccgtcccaaaaaaagga |
30964756 |
T |
|
| Q |
100 |
ttgaactaattcaacctcaagaagaagcatgtttgtgttaaatgcaatgtcaagagaataaaacaaagctgtgtgtttccttgcttatccagctcaaatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30964757 |
ttgaactaattcaacctcaagaagaagcatgtttgtgttaaatgcaatgtcaagagaataaaacaaagctgtgtgtttccttgcttatccagctcaaatt |
30964856 |
T |
|
| Q |
200 |
aaggcaaacatgaagacttagttattgaggtttattgcagctcaaattaaggcaaacatgaatacttgattgttgaggtttatgtatctctgaataactt |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30964857 |
aaggcaaacatgaatacttagttattgaggtttattgcagctcaaattaaggcaaacatgaatacttgattgttgaggtttatgtatctctgaataattt |
30964956 |
T |
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| Q |
300 |
aagtatgtcaatacgaagagctattgaaaacacttcatattaatgtcattgtattttctt |
359 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30964957 |
aagtatatcaatacgaagagctattgaaaacacttcatattaatgtcattgtattttctt |
30965016 |
T |
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