View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16787_high_5 (Length: 220)
Name: NF16787_high_5
Description: NF16787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16787_high_5 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: scaffold0153 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 25540 - 25376
Alignment:
| Q |
43 |
aaacagcgggagagtaaacacaaggatgagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaagaggagaataactgagataatatgat |
142 |
Q |
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| T |
25540 |
aaacagcgggagagtaaacacaaggatgagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaagaggagaataactgagataatatgat |
25441 |
T |
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| Q |
143 |
tcacatgagaagaattgaaatacttgttgctgcttatggtgaagctaaattgaatacatgttcat |
207 |
Q |
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| T |
25440 |
tcacatgagaagaattgaaatacttgttgctgcttatggtgaagctaaattgaatacatgttcat |
25376 |
T |
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Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 25996069 - 25995953
Alignment:
| Q |
62 |
acaaggatgagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaagaggagaataactgagataatatgattcacatgagaagaattgaa |
161 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |
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| T |
25996069 |
acaaggacgagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaagaggagaagaactgagataatatgattcacatcagaagaattcaa |
25995970 |
T |
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| Q |
162 |
atacttgttgctgctta |
178 |
Q |
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| T |
25995969 |
atacttgttgctgctta |
25995953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 26095478 - 26095370
Alignment:
| Q |
70 |
gagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaagaggagaataactgagataatatgattcacatgagaagaattgaaatacttgt |
169 |
Q |
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| T |
26095478 |
gagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaagaggagaagaactgagataatatgattcacatcagaagaattgaaatacttgt |
26095379 |
T |
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| Q |
170 |
tgctgctta |
178 |
Q |
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| T |
26095378 |
tgctgctta |
26095370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 15156643 - 15156595
Alignment:
| Q |
70 |
gagataatacagacgttagggtgaggcgagtgagtcgtcagtgagaaga |
118 |
Q |
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| T |
15156643 |
gagataatagagatgttagggtgaggcgcgtgagtcgtcagtgagaaga |
15156595 |
T |
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