View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16787_low_1 (Length: 460)
Name: NF16787_low_1
Description: NF16787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16787_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 17898523 - 17898969
Alignment:
| Q |
1 |
cataaaaatgagcttttgaagctctttaggaggtgtcagaattcaaagagaaactaaaatttgctaaccaatt--------tattgccttctcgtcaact |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| | |
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| T |
17898523 |
cataaaaatgagcttttgaagctctttaggaggtgtcaaaattcaaagagaaactaaaatttgctaaccaatcagcacatctattgcctttgcgtcaagt |
17898622 |
T |
|
| Q |
93 |
gtgaataacatgtatgctagctttgctgaaaaagctgtggaatatgtcgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtc |
192 |
Q |
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||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
17898623 |
gtgaataacatgtatgccagtttcgctgaaaaagctgtggaatatgtcgaatcaatgaaggg-tggttccattgatcttgcaatgtttggtaaccatgtc |
17898721 |
T |
|
| Q |
193 |
aatacgcactttcgagtctttttcaataattaggtgagatagaccttcttttcaagccatatcaagtctcagatatggaccctgcatctttgcatgaaat |
292 |
Q |
| |
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|||| |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17898722 |
aataaacactttcgagtcattttcaacaattagatgagatagaccttcttttcaagccatatcaagtctcagatatggaccctgcatctttgcatgaaat |
17898821 |
T |
|
| Q |
293 |
tcatcacaagtttcaattttttcgattaaatcctttaagccatagagaccatatgaatggcgaagaagccttccacatcctgcgatctttctattgcttt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
17898822 |
gcatcacaagtttcaattttttcgattaaatcctttaagccatagagaccatatgaatgacgaagaagccttccacatcctgcaatctttctattgcttt |
17898921 |
T |
|
| Q |
393 |
tagaatctctgtcacaattaagcttcacccaattatcatttggtctct |
440 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17898922 |
tacaatctctgtcacgattaagcttcacccaattatcatttggtctct |
17898969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 42161152 - 42161278
Alignment:
| Q |
132 |
gaatatgtcgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgaga |
231 |
Q |
| |
|
||||| |||||| || |||||| ||||||| ||||||||||||| || |||||||| |||||| ||||||| ||||| | |||| ||| | |||||| |
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| T |
42161152 |
gaatacgtcgaaccagagaagggatggttccattgatcttgcaattgttagtaaccatatcaataagcacttttgagtcactctcaacaatcacgtgaga |
42161251 |
T |
|
| Q |
232 |
tagaccttcttttcaagccatatcaag |
258 |
Q |
| |
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|| ||| || | |||||||||||||| |
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| T |
42161252 |
taaaccctcactccaagccatatcaag |
42161278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 140 - 267
Target Start/End: Complemental strand, 43691721 - 43691594
Alignment:
| Q |
140 |
cgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgagatagacctt |
239 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||| |||||||||||| |||||| |||||||||||||||||||| |
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| T |
43691721 |
cgaatcaaggaaggggtagttcctttgatcttgcaatttttggtgaccatatctataaacactttcgagtcactttcaacaattaggtgagatagacctt |
43691622 |
T |
|
| Q |
240 |
cttttcaagccatatcaagtctcagata |
267 |
Q |
| |
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|| |||||||||||| ||||| |||||| |
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|
| T |
43691621 |
ctcttcaagccatatgaagtcccagata |
43691594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 20670192 - 20670300
Alignment:
| Q |
149 |
gaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgagatagaccttcttttcaag |
248 |
Q |
| |
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|||||| ||||||| ||||||||||||| || |||||||| |||||| | ||||| ||||| | |||| ||| | |||||||| ||| || | |||| |
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| T |
20670192 |
gaagggatggttccattgatcttgcaattgttagtaaccatatcaataagaacttttgagtcactctcaacaatcacgtgagataaaccctcactccaag |
20670291 |
T |
|
| Q |
249 |
ccatatcaa |
257 |
Q |
| |
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||||||||| |
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| T |
20670292 |
ccatatcaa |
20670300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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