View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16787_low_4 (Length: 241)

Name: NF16787_low_4
Description: NF16787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16787_low_4
NF16787_low_4
[»] chr5 (2 HSPs)
chr5 (19-228)||(2211580-2211792)
chr5 (18-228)||(2198919-2199129)
[»] chr8 (2 HSPs)
chr8 (23-89)||(41931049-41931115)
chr8 (20-94)||(1310124-1310198)
[»] chr7 (3 HSPs)
chr7 (20-94)||(38622872-38622946)
chr7 (35-95)||(23117367-23117427)
chr7 (31-103)||(24942480-24942552)
[»] chr6 (2 HSPs)
chr6 (31-70)||(5730197-5730236)
chr6 (23-87)||(770343-770407)
[»] chr2 (2 HSPs)
chr2 (20-95)||(28804329-28804404)
chr2 (29-101)||(7636920-7636992)
[»] chr4 (1 HSPs)
chr4 (33-102)||(4145259-4145328)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 2211580 - 2211792
Alignment:
Q  19 gtatagccgctgtttgacaagattttgtaat---aaatagcttatcatggaacaatacctatttcttcaaattctgctatactatagttctgctttttaa 115  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2211580 gtatagccgctgtttgacaagattttgtaataataaatagcttatcatggaacaatacctatttcttcaaattctgctatactatagttttgctttttaa 2211679  T
Q  116 caacactagcaaaaatttggacctgtattgataagaaattaatcgtttcagttctaattgtatcagtgcttttacagattgtctgttgagaaatatccaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2211680 caacactagcaaaaatttggacctgtattgataagaaattagtcgtttcagttctaattgtatcagtgcttttacagattgtctgttgagaaatatccaa 2211779  T
Q  216 ataatcctatgct 228  Q
    |||||||||||||    
T  2211780 ataatcctatgct 2211792  T

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Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 2198919 - 2199129
Alignment:
Q  18 agtatagccgctgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgctatactatagttctgctttttaaca 117  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||| |||||| | |||| |||||||||||    
T  2198919 agtatagccgctatttgacaagattttgtaataaatagcttattatgaaacaataactatttcttcgaattctgttatactgttgttccgctttttaaca 2199018  T
Q  118 acactagcaaaaatttggacctgtattgataagaaattaatcgtttcagttctaattgtatcagtgcttttacagattgtctgttgagaaatatccaaat 217  Q
    |||||||||||||||||||| |||||| |||||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2199019 acactagcaaaaatttggacatgtattaataagacattagccgtttcagttctgattgtatcagtgcttttacagattgtctgttgagaaatatccaaat 2199118  T
Q  218 aatcctatgct 228  Q
    |||||||||||    
T  2199119 aatcctatgct 2199129  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 41931115 - 41931049
Alignment:
Q  23 agccgctgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattc 89  Q
    ||||| |||||||||| |||||||| ||||||||||||| |||||||||| | |||| |||||||||    
T  41931115 agccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 41931049  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 1310198 - 1310124
Alignment:
Q  20 tatagccgctgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgcta 94  Q
    |||||||||| ||| |||| || ||||| |||||||  ||||| ||||||||| | |||| ||||||||||||||    
T  1310198 tatagccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattctgcta 1310124  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 38622872 - 38622946
Alignment:
Q  20 tatagccgctgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgcta 94  Q
    |||||||||| |||||||| |||||||  |||||||  ||||||||||||||| | |||| ||||||||||||||    
T  38622872 tatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgcta 38622946  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 23117367 - 23117427
Alignment:
Q  35 acaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgctat 95  Q
    |||| |||||||  |||||||| |||||||||| |||| | |||| |||||||||||||||    
T  23117367 acaacattttgtgctaaatagcatatcatggaaaaatagcgatttgttcaaattctgctat 23117427  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 24942552 - 24942480
Alignment:
Q  31 tttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgctatactatagt 103  Q
    |||||||| |||||||| ||| |||| ||||||||||||||| | || | |||| |||||| ||| |||||||    
T  24942552 tttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttcatattctgttatgctatagt 24942480  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 5730197 - 5730236
Alignment:
Q  31 tttgacaagattttgtaataaatagcttatcatggaacaa 70  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  5730197 tttgacaagattttgtactaaatagcatatcatggaacaa 5730236  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 770407 - 770343
Alignment:
Q  23 agccgctgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaat 87  Q
    ||||||| ||||||||   |||||| |||||||| ||||| ||||||||||| |||| |||||||    
T  770407 agccgctatttgacaaccctttgtactaaatagcgtatcacggaacaataccgatttgttcaaat 770343  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 28804404 - 28804329
Alignment:
Q  20 tatagccgctgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgctat 95  Q
    |||||||| | |||||||| | |||||| ||||||||||||  || ||||||| | |||| |||||||||||||||    
T  28804404 tatagccgttatttgacaatactttgtactaaatagcttattctgaaacaatagcgatttgttcaaattctgctat 28804329  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 7636992 - 7636920
Alignment:
Q  29 tgtttgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgctatactata 101  Q
    |||||||||| |||||| | |||||||| ||||   |||||||  | |||||||||||||||||||| |||||    
T  7636992 tgtttgacaatattttgcactaaatagcgtatcccagaacaattgcgatttcttcaaattctgctatgctata 7636920  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 4145259 - 4145328
Alignment:
Q  33 tgacaagattttgtaataaatagcttatcatggaacaatacctatttcttcaaattctgctatactatag 102  Q
    |||||| |||||||| | |||||| |||  |||||||||| | |||| ||||||||||||||| ||||||    
T  4145259 tgacaacattttgtactgaatagcgtatggtggaacaataacaatttgttcaaattctgctatgctatag 4145328  T

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