View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16787_low_5 (Length: 240)
Name: NF16787_low_5
Description: NF16787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16787_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 30999426 - 30999221
Alignment:
| Q |
16 |
atgaataaaccaaatagcccgactctcttaatgctgccagatatcacatctccaacatgaaatttacccaaatcagatatcacagattttgatgaactag |
115 |
Q |
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|||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30999426 |
atgaataaaccagatggctcgacactcttaatgctgccagatatcacatctccaacatgaaatttacccaaatcagatatcacagattttgatgaactag |
30999327 |
T |
|
| Q |
116 |
aaaatgttgatgtcttcaatgtaacttcaacacaatttgagagaggcgccaccgatataaccctgttatttactaccttagtacacattttgaagtacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30999326 |
aaaatgttgatgtcttcaatgtaacttcaacacaatttgagagaggcgccaccgatataaccctgttatttactaccttagtacacattttgaagtacct |
30999227 |
T |
|
| Q |
216 |
cgttaa |
221 |
Q |
| |
|
|||||| |
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| T |
30999226 |
cgttaa |
30999221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 23881133 - 23880928
Alignment:
| Q |
16 |
atgaataaaccaaatagcccgactctcttaatgctgccagatatcacatctccaacatgaaatttacccaaatcagatatcacagattttgatgaactag |
115 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23881133 |
atgaataaaccaaatggctcgactcgcttaatgctgccagatatcacatctccaacatgaaatttacccaaatcagatatcacagattttgatgaactag |
23881034 |
T |
|
| Q |
116 |
aaaatgttgatgtcttcaatgtaacttcaacacaatttgagagaggcgccaccgatataaccctgttatttactaccttagtacacattttgaagtacct |
215 |
Q |
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|
||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||||||| |
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| T |
23881033 |
aaactgttgatgtcttcaatgtaacttcaacacgatttgagagaggctccaccgatacaaccctgttatttactaccttagtacacgttctgaagtacct |
23880934 |
T |
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| Q |
216 |
cgttaa |
221 |
Q |
| |
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|||||| |
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|
| T |
23880933 |
cgttaa |
23880928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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