View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16787_low_6 (Length: 239)
Name: NF16787_low_6
Description: NF16787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16787_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 39600835 - 39600625
Alignment:
| Q |
20 |
atagtctccatcttttattacaggaacagttccaaatggctgcagattgtgaacaaaaaacattcatgagtcagaaaatgaataaactt--tgaatc--c |
115 |
Q |
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| T |
39600835 |
atagtctccatcttttattacaggaacagttccaaaaggctgcagattatgaacaaaaaacatgcatgagtcagaaaatgaataatcaaaataaataaac |
39600736 |
T |
|
| Q |
116 |
ttttagcatagtactaaacaaagatgaacctgtaatttgaggtactcaggatctttgtgttcaccctccaagacattaacagggacaacctcaaattcga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39600735 |
ttttagcatagtactaaacaaagatgaacctgtaatttgaggtactcaggatctttgtgttcaccctccaagacattaacagggacaacctcaaattcga |
39600636 |
T |
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| Q |
216 |
ttttcttctca |
226 |
Q |
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||||||||||| |
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| T |
39600635 |
ttttcttctca |
39600625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 39611160 - 39611066
Alignment:
| Q |
132 |
aacaaagatgaacctgtaatttgaggtactcaggatctttgtgttcaccctccaagacattaacagggacaacctcaaattcgattttcttctca |
226 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
39611160 |
aacaaacatgaacctgtaatttgaggtactcaggatccttgtgttcacccttcaagacattaatagggacaacctcaaattctatttccttctca |
39611066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 39611271 - 39611215
Alignment:
| Q |
20 |
atagtctccatcttttattacaggaacagttccaaatggctgcagattgtgaacaaa |
76 |
Q |
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||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||| |
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| T |
39611271 |
atagtctccatctttaataacaggaacatttccaaatggctgcagattatgaacaaa |
39611215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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