View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16787_low_8 (Length: 214)
Name: NF16787_low_8
Description: NF16787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16787_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 53453306 - 53453486
Alignment:
| Q |
16 |
aatatcacgttgtaacataaagatctagattattatgacttattttaattattgaatagtatgatgtaattttatccatctagccgaacccacttagtga |
115 |
Q |
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| T |
53453306 |
aatatcacgttgtaacataaagatctagattattatgacttattttaattattgaatagtatggtgtaattttatccatctagccgaacccaattagtga |
53453405 |
T |
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| Q |
116 |
aataaagcttgctggttgttgtaacatgaattctataaaaatgttttgtagtgtcttgtgagaacattttatgggacctct |
196 |
Q |
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| T |
53453406 |
aataaggcttgctggttgttgtaacatgaattctataaaaatgttttgtagtgtcttgtgagaacattttatgggacctct |
53453486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 21862803 - 21862742
Alignment:
| Q |
75 |
tatgatgtaattttatccatctagccgaacccacttagtgaaataaagcttgctggttgttg |
136 |
Q |
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| T |
21862803 |
tatggtgtcatttgatccatgtagccgaccccacttagtgagataaggcttgcttgttgttg |
21862742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 32170632 - 32170676
Alignment:
| Q |
82 |
taattttatccatctagccgaacccacttagtgaaataaagcttg |
126 |
Q |
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| T |
32170632 |
taatttgatccatgtagccgaccccacttagtgagataaagcttg |
32170676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 43491528 - 43491590
Alignment:
| Q |
75 |
tatgatgtaattttatccatctagccgaacccacttagtgaaataaagcttgctggttgttgt |
137 |
Q |
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| T |
43491528 |
tatgatgtaatttcatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt |
43491590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 32276911 - 32276967
Alignment:
| Q |
81 |
gtaattttatccatctagccgaacccacttagtgaaataaagcttgctggttgttgt |
137 |
Q |
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| T |
32276911 |
gtaatttgatccatgtagacgaacccacttagtgggataaagcttggttgttgttgt |
32276967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 50967084 - 50967028
Alignment:
| Q |
81 |
gtaattttatccatctagccgaacccacttagtgaaataaagcttgctggttgttgt |
137 |
Q |
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| T |
50967084 |
gtaatttgatccatgtagccgacctcacttagtggaataaagcttggttgttgttgt |
50967028 |
T |
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