View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16788_high_2 (Length: 351)
Name: NF16788_high_2
Description: NF16788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16788_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 60 - 330
Target Start/End: Original strand, 31541573 - 31541835
Alignment:
| Q |
60 |
gaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnngatgatcttaaattaattattaa |
159 |
Q |
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| T |
31541573 |
gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa---------gatgatcttaaattaattattaa |
31541663 |
T |
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| Q |
160 |
cgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagcaa |
258 |
Q |
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||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31541664 |
cgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaacaa |
31541763 |
T |
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| Q |
259 |
caatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagag |
330 |
Q |
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| T |
31541764 |
caatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagag |
31541835 |
T |
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