View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16788_low_1 (Length: 474)
Name: NF16788_low_1
Description: NF16788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16788_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 51845720 - 51846160
Alignment:
| Q |
15 |
gagatgaataaagtaagcagagatatatttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattacc |
114 |
Q |
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| T |
51845720 |
gagatgaataaagtaagcagagatatatttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattacc |
51845819 |
T |
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| Q |
115 |
gcagggaggagaagttatttgttactgaatacatgcctaaaggaagcttgttatatgtcttgcatggtaacgctgtcacattttatttcttttcctttaa |
214 |
Q |
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| T |
51845820 |
gcagggaggagaagttatttgttactgaatacatgcctaaaggaagcttgttatatgtcttgcatggtaacgctgtcacattttatttcttttcctttaa |
51845919 |
T |
|
| Q |
215 |
tgagcttgttctatctcaaatttggtgcattcatgtgttattttatagtcatttatacacattcatgtgtaatgtttgttgtacaggtgatagaggaaca |
314 |
Q |
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| T |
51845920 |
tgagcttgttctatctcaaatttggtgcattcatgtgttattttatagtcatttatacacattcatgtgtaatgtttgttgtacaggtgatagaggaaca |
51846019 |
T |
|
| Q |
315 |
agtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatactgaatttgaatccgaagacctgc |
414 |
Q |
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| T |
51846020 |
agtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatactgaatttgaatccgaagacctgc |
51846119 |
T |
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| Q |
415 |
cacatggaaacctcaaatcaagcaatatacttctagccgat |
455 |
Q |
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| T |
51846120 |
cacatggaaacctcaaatcaagcaatatacttctagccgat |
51846160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 18628379 - 18628238
Alignment:
| Q |
42 |
tttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattaccgcagggaggagaagttatttgttactg |
141 |
Q |
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|||||||| |||||||||| |||||||||| ||||| | |||||||||| ||||||||||||| ||||| || | ||||| ||| | |||||||||| |
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| T |
18628379 |
tttgatgctgagatgagacagtttgggaggattagacatgctaatattttgactcctttggcttatcattatcgtcgagaggaaaagctttttgttactg |
18628280 |
T |
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| Q |
142 |
aatacatgcctaaaggaagcttgttatatgtcttgcatggta |
183 |
Q |
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| || | |||||||||||||||||||||||||||||| |||| |
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| T |
18628279 |
agtataagcctaaaggaagcttgttatatgtcttgcacggta |
18628238 |
T |
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