View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16788_low_2 (Length: 429)
Name: NF16788_low_2
Description: NF16788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16788_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 26920162 - 26919745
Alignment:
| Q |
1 |
ttgaataaaaggtataagagagtgaatgatatacttggtaaaggaacagcttgtagagttgttgagaatcaaggtttgttggattcaatggatttgtcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26920162 |
ttgaataaaaggtataagagagtgaatgatatacttggtaaaggaacagcttgtagagttgttgagaatcaaggtttgttggattcaatggatttgtcac |
26920063 |
T |
|
| Q |
101 |
ctaagatgaaagatgaagttaggaaattgcttaattctaaacatcttttctttagggaaatgtgtgcttatcataatagttgtggccatggcggtgttgg |
200 |
Q |
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| T |
26920062 |
ctaagatgaaagatgaagttaggaaattgcttaattctaaacatcttttctttagggaaatgtgtgcttatcataatagttgtggccatggtggtgttgc |
26919963 |
T |
|
| Q |
201 |
tacttctaatgttcaacatcaagtagagggtggaagtggaacagcaacaccacctcagaatcaacctcaacagcagcatcaacaacagcaccagcagcag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
26919962 |
tacttctaatgttcaacatcaagtagagggtggaagtggaacaacaacaccacctcagaatcaacctcaacaacagcatcaacaccagcaccagcagcag |
26919863 |
T |
|
| Q |
301 |
aaccaacagcattgttttcattcatcagagaatggtgtagggagtttaggtgtttcaagaggagaaggattgaggatgttgaaaataggaagtggagatg |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26919862 |
aaccaacaacattgttttcattcatcagagaatggtgtagggagtttaggtgtttcaagaggagaaggattgaggatgttgaaaataggaagtggatatg |
26919763 |
T |
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| Q |
401 |
ttgaagaagaggatgatg |
418 |
Q |
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| T |
26919762 |
ttgaagaagaggatgatg |
26919745 |
T |
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Back To:
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Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 41825122 - 41825312
Alignment:
| Q |
1 |
ttgaataaaaggtataagagagtgaatgatatacttggtaaaggaacagcttgtagagttgttgagaatcaaggtttgttggattcaatggatttgtcac |
100 |
Q |
| |
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||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
41825122 |
ttgaacaaaaggtataaaagagttaatgatattcttggtaaaggaacagcttgtagagttgttgaaaatcaaactttgttggatacaatggatttgtccg |
41825221 |
T |
|
| Q |
101 |
ctaagatgaaagatgaagttaggaaattgcttaattctaaacatcttttctttagggaaatgtgtgcttatcataatagttgtggccatgg |
191 |
Q |
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| ||| ||||||| |||| ||| ||| | || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41825222 |
caaagttgaaagaagaagctagaaaacttctgaattctaagcatcttttttttagagaaatgtgtgcttatcataatagttgtggccatgg |
41825312 |
T |
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