View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16789_high_1 (Length: 369)
Name: NF16789_high_1
Description: NF16789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16789_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 4383787 - 4383424
Alignment:
| Q |
1 |
ttattttctttggtttgttcaataagtaaccttacggatcatagccatgtcctctaactttcatggctgtaatagacgattgcatatgccgagacctggc |
100 |
Q |
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| T |
4383787 |
ttattttctttggattgttcaataagtaaccttacggatcatagccatgtcctctaactttcatggctgtaatagacgattgcatatgccgagacctggc |
4383688 |
T |
|
| Q |
101 |
aataataaacggtcgcatatgtcgagaccaattttgattctaaagtgttatttgg-----cacattttatcgccaaaaacacaccattcagagattgacc |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4383687 |
aataataaacggtcgcatatgtcgagaccaattttgattctaaagtgttatttggcacgacacattttatcgccaaaaacacaccattcagagattgacc |
4383588 |
T |
|
| Q |
196 |
attaaatactttg---nnnnnnnnnnnntaaagctaagaacttggcggaaatcactgagaagtggtggtaaaacaacatatgagatatgttcatcgtttg |
292 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4383587 |
attaaatactttgaaaaaaaaataaaaataaagctaagaacttggcggaaatcactgagaagtggtggtaaaacaacatatgagatatgttcatcggttg |
4383488 |
T |
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| Q |
293 |
atcaaaaatcaatgccaccataaccattcaatgccaactgaatttatagataaacatacaaaac |
356 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4383487 |
atcaaaaaccaatgccaccataaccattcaatgccaactgaatttatagataaacatacaaaac |
4383424 |
T |
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