View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16789_high_11 (Length: 311)

Name: NF16789_high_11
Description: NF16789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16789_high_11
NF16789_high_11
[»] scaffold0645 (1 HSPs)
scaffold0645 (7-94)||(779-866)
[»] chr3 (6 HSPs)
chr3 (7-94)||(11561829-11561916)
chr3 (1-82)||(16180606-16180687)
chr3 (1-82)||(11191253-11191334)
chr3 (32-82)||(45804611-45804661)
chr3 (32-82)||(1209196-1209246)
chr3 (32-82)||(50756564-50756614)
[»] chr7 (8 HSPs)
chr7 (1-82)||(13134217-13134298)
chr7 (10-82)||(14154291-14154363)
chr7 (9-82)||(4691964-4692037)
chr7 (9-82)||(43747208-43747281)
chr7 (13-82)||(9255851-9255920)
chr7 (13-82)||(9314330-9314399)
chr7 (13-82)||(25941110-25941179)
chr7 (32-81)||(24271062-24271111)
[»] chr8 (10 HSPs)
chr8 (1-82)||(36729083-36729164)
chr8 (1-82)||(6574305-6574386)
chr8 (1-79)||(12800303-12800381)
chr8 (13-89)||(22482619-22482695)
chr8 (9-82)||(21513053-21513125)
chr8 (9-77)||(38988094-38988162)
chr8 (9-77)||(39019191-39019259)
chr8 (9-82)||(17979729-17979802)
chr8 (1-37)||(2718074-2718110)
chr8 (1-37)||(36733878-36733914)
[»] chr2 (2 HSPs)
chr2 (1-82)||(25140051-25140132)
chr2 (1-72)||(10744531-10744602)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-81)||(25300-25380)
[»] scaffold0123 (1 HSPs)
scaffold0123 (9-82)||(15633-15706)
[»] chr5 (4 HSPs)
chr5 (1-82)||(8504966-8505047)
chr5 (1-82)||(8834414-8834495)
chr5 (32-79)||(22110562-22110609)
chr5 (32-82)||(16605556-16605606)
[»] chr1 (5 HSPs)
chr1 (9-82)||(28477988-28478061)
chr1 (1-82)||(6833014-6833096)
chr1 (9-77)||(18120309-18120375)
chr1 (32-82)||(22826030-22826080)
chr1 (1-29)||(44891255-44891283)
[»] scaffold0439 (1 HSPs)
scaffold0439 (1-82)||(3163-3244)
[»] chr6 (2 HSPs)
chr6 (32-89)||(19234152-19234209)
chr6 (32-82)||(25917464-25917514)
[»] scaffold0113 (1 HSPs)
scaffold0113 (2-82)||(33573-33653)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-82)||(66568-66649)
[»] scaffold0005 (1 HSPs)
scaffold0005 (6-79)||(188217-188290)
[»] chr4 (4 HSPs)
chr4 (6-79)||(14629093-14629166)
chr4 (12-82)||(45315476-45315546)
chr4 (1-37)||(12622094-12622130)
chr4 (1-37)||(19567240-19567276)
[»] scaffold0059 (1 HSPs)
scaffold0059 (32-82)||(48882-48932)
[»] scaffold0742 (1 HSPs)
scaffold0742 (9-82)||(2732-2805)
[»] scaffold0100 (2 HSPs)
scaffold0100 (34-82)||(27875-27923)
scaffold0100 (24-82)||(10412-10470)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-37)||(61475-61511)


Alignment Details
Target: scaffold0645 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 866 - 779
Alignment:
Q  7 ttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacaccgacaacgacaa 94  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  866 ttcaaatcatcatcaacaatggttcacataatttctcaataacatctcattaattatttcgacaacttgacaacaccgacaacgacaa 779  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 11561829 - 11561916
Alignment:
Q  7 ttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacaccgacaacgacaa 94  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  11561829 ttcaaatcatcatcaacaatggttcacataatttctcaataacatctcattaattatttcgacaacttgacaacaccgacaacgacaa 11561916  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16180687 - 16180606
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  16180687 attaacttcaaatcatcattaacaatggttcacataatttctcaataacatctcattaattatttcgacaacttgacaacac 16180606  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11191253 - 11191334
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  11191253 attaacttcaaatcatcattaacaatggttcacataatttctcaataacaactcattaattatttcgacaacttgacaacac 11191334  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 45804661 - 45804611
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  45804661 acataatttctcaataacaactcattaattatttcgacaacttgacaacac 45804611  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 1209246 - 1209196
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||| | ||| ||||||||||| |||||||||||||||    
T  1209246 acataatttctcaataagaactcattaattatttcaacaacttgacaacac 1209196  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 50756614 - 50756564
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||| || | ||| |||||||||||||||||||||||||||    
T  50756614 acataatttctcaagaacaactcattaattatttcgacaacttgacaacac 50756564  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13134298 - 13134217
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  13134298 attaacttcaaatcatcattaacaatggttcacattatttctcaataacatctcattaattatttcgacaacttgacaacac 13134217  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 14154363 - 14154291
Alignment:
Q  10 aaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||| |||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  14154363 aaatcatcatcaacaatggttcacataatttctcaataacaactcattaattatttcgacaacttgacaacac 14154291  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 4692037 - 4691964
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| |||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  4692037 caaatcatcatcaacaatggttcacataatttctcaataacaactcattaattatttcgacaacttgacgacac 4691964  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 43747208 - 43747281
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| |||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  43747208 caaatcatcatcaacaatggttcacataatttctcaataacaactcattaattatttcgacaacttgacgacac 43747281  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 9255851 - 9255920
Alignment:
Q  13 tcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||| || ||||||||||||||||| | ||| ||||||||||||| |||||||||||||    
T  9255851 tcatcattaacaatgcttcacataatttctcaataacaactcattaattatttcgataacttgacaacac 9255920  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 9314399 - 9314330
Alignment:
Q  13 tcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||| || ||||||||||||||||| | ||| ||||||||||||| |||||||||||||    
T  9314399 tcatcattaacaatgcttcacataatttctcaataacaactcattaattatttcgataacttgacaacac 9314330  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 25941110 - 25941179
Alignment:
Q  13 tcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||| ||||||| || ||||||||||||||||| | ||| |||||| ||||||||||||||||||||    
T  25941110 tcatcatcaacaatgcttcacataatttctcaataacaactcattaattttttcgacaacttgacaacac 25941179  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 24271111 - 24271062
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaaca 81  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  24271111 acataatttctcaataacaactcattaattatttcgacaacttgacaaca 24271062  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36729164 - 36729083
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  36729164 attaacttcaaatcatcattaacaatggtgcacataatttctcaataacaactcattaattatttcgacaacttgacaacac 36729083  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6574386 - 6574305
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||   ||| |||||||||||||||||||||||||||    
T  6574386 attaacttcaaatcatcattaacaatgctttacataattcctcaataactactcattaattatttcgacaacttgacaacac 6574305  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12800303 - 12800381
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaa 79  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| | ||| |||||||||| |||||||||||||    
T  12800303 attaacttcaaatcatcattaacaatggtgcacataatttctcaataacaactcattaattattttgacaacttgacaa 12800381  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 22482619 - 22482695
Alignment:
Q  13 tcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacaccgacaac 89  Q
    |||||||||| ||||  | ||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  22482619 tcatcattaataatgtctcacataatttctcaataacaactcattaattatttcgacagcttgacaacaccgacaac 22482695  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 21513053 - 21513125
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| |||||||||| ||||| ||||||||||| | ||| |||||||||||||||||||||| ||||    
T  21513053 caaatcatcatcaacaatggttcacata-tttctcaataacaactcattaattatttcgacaacttgacgacac 21513125  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 38988094 - 38988162
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgac 77  Q
    ||||||||||| |||||||||| ||||||||||||||||| | |||  ||||||||||||||| |||||    
T  38988094 caaatcatcatcaacaatggttcacataatttctcaataacaactcactaattatttcgacaatttgac 38988162  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 39019191 - 39019259
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgac 77  Q
    ||||||||||| |||||||||| ||||||||||||||||| | |||  ||||||||||||||| |||||    
T  39019191 caaatcatcatcaacaatggttcacataatttctcaataacaactcactaattatttcgacaatttgac 39019259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 17979802 - 17979729
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| |||||||||| |||||||| ||| | || | ||| ||||||||||| |||||||||||||||    
T  17979802 caaatcatcatcaacaatggttcacataattcctcgagaacaactcattaattatttcaacaacttgacaacac 17979729  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2718110 - 2718074
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataa 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  2718110 attaacttcaaatcatcattaacaatgcttcacataa 2718074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36733914 - 36733878
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataa 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  36733914 attaacttcaaatcatcattaacaatgcttcacataa 36733878  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25140051 - 25140132
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| | ||| |||||||||||||||||||||||||||    
T  25140051 attaacttcaaatcatcattaacaatggttcacatgatttctcaataacaactcattaattatttcgacaacttgacaacac 25140132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10744602 - 10744531
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaac 72  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||| | ||| |||||||||||||||||    
T  10744602 attaacttcaaatcatcattaacaacggtgcacataatttctcaataacaactcattaattatttcgacaac 10744531  T

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Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25300 - 25380
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaaca 81  Q
    ||||||||||||||||||||||||||| |  |||||||| |||||||| | ||| ||||||||||||||||||||||||||    
T  25300 attaacttcaaatcatcattaacaatgatgcacataattcctcaataacaactcattaattatttcgacaacttgacaaca 25380  T

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Target: scaffold0123 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 15633 - 15706
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| |||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  15633 caaatcatcatcaacaatggttcacataatttctcaataacaactcattaattatttcgacaacttgacgacac 15706  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8505047 - 8504966
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||| ||||||||||||||||| |  |||||||| |||||||| | ||| |||||||||||||||||||||||||||    
T  8505047 attaacttcgaatcatcattaacaatgatgcacataattcctcaataacaactcattaattatttcgacaacttgacaacac 8504966  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8834495 - 8834414
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||||||||||||| || ||||||||  ||||||| | ||| |||||||||| ||||||||||||||||    
T  8834495 attaacttcaaatcatcattaacaatgcttcacataattcatcaataacaactcattaattattttgacaacttgacaacac 8834414  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 22110562 - 22110609
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaa 79  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  22110562 acataatttctcaataacaactcattaattatttcgacaacttgacaa 22110609  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 16605606 - 16605556
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||| | ||| ||||||||||||||||||| |||||||    
T  16605606 acataatttctcaataacaactcattaattatttcgacaacttaacaacac 16605556  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 28478061 - 28477988
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| ||||||| || ||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  28478061 caaatcatcatcaacaatgattcacataatttctcaataacaactcgttaattatttcgacaacttgacgacac 28477988  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6833014 - 6833096
Alignment:
Q  1 attaacttcaaatcatcatt-aacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||||||| ||||||| || || |||||  ||||||| | ||| |||||||||| ||||||||||||||||    
T  6833014 attaacttcaaatcatcatttaacaatgcttcacgtaattcatcaataacaactcattaattattttgacaacttgacaacac 6833096  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 18120309 - 18120375
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgac 77  Q
    ||||||||||| |||||||||| ||||||||||||||||| |   | ||||||||||||||||||||||    
T  18120309 caaatcatcatcaacaatggttcacataatttctcaataaca--acattaattatttcgacaacttgac 18120375  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 22826080 - 22826030
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||||||||    
T  22826080 acataatttctcaataacaactcattaatcatttcgacaacttgacaacac 22826030  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44891255 - 44891283
Alignment:
Q  1 attaacttcaaatcatcattaacaatggt 29  Q
    |||||||||||||||||||||||||||||    
T  44891255 attaacttcaaatcatcattaacaatggt 44891283  T

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Target: scaffold0439 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3163 - 3244
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||| |||||||||||| |||| |  |||||||| |||||||| | ||| |||||||||||||||||||||||||||    
T  3163 attaacttcgaatcatcattaaaaatgatgcacataattcctcaataacaactcattaattatttcgacaacttgacaacac 3244  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 19234152 - 19234209
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacaccgacaac 89  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  19234152 acataatttctcaataacaactcattaattatttcgacaacttgacaacaccgacaac 19234209  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 25917464 - 25917514
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||| |  || |||||||||||||||||||||||||||    
T  25917464 acataatttctcaataacaattcattaattatttcgacaacttgacaacac 25917514  T

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Target: scaffold0113 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 33573 - 33653
Alignment:
Q  2 ttaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||||||||||||||  |||||||||||| || | | ||| ||||||||||||| |||||| ||||||    
T  33573 ttaacttcaaatcatcattaacaatggtgcacataatttctcgatcacaactcattaattatttcgaaaacttgtcaacac 33653  T

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Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 66649 - 66568
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||||||||||| ||||||||   |  ||||||| ||||||||| | ||| |||||||||||||||||||||||||||    
T  66649 attaacttcaaatcattattaacaacaatgcacataatctctcaataacaactcattaattatttcgacaacttgacaacac 66568  T

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Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 188290 - 188217
Alignment:
Q  6 cttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaa 79  Q
    ||||||||||||||||||||||||  ||||||||| || |||| | ||| ||||||||||| ||||||||||||    
T  188290 cttcaaatcatcattaacaatggtgcacataatttatcgataacaactcattaattatttcaacaacttgacaa 188217  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 14629093 - 14629166
Alignment:
Q  6 cttcaaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaa 79  Q
    ||||||||||||||||||||||||  ||||||||| || |||| | ||| ||||||||||| ||||||||||||    
T  14629093 cttcaaatcatcattaacaatggtgcacataatttatcgataacaactcattaattatttcaacaacttgacaa 14629166  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 45315546 - 45315476
Alignment:
Q  12 atcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||||||| |||||||||| |||||||| |||||||| | ||  |||||||||||||||||||||| ||||    
T  45315546 atcatcatcaacaatggttcacataattcctcaataacaacttattaattatttcgacaacttgacgacac 45315476  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12622094 - 12622130
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataa 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  12622094 attaacttcaaatcatcattaacaatgcttcacataa 12622130  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19567276 - 19567240
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataa 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  19567276 attaacttcaaatcatcattaacaatgcttcacataa 19567240  T

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Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 48882 - 48932
Alignment:
Q  32 acataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  48882 acataatttctcaataacaactcattaattatttcgacaacttgacaacac 48932  T

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Target: scaffold0742 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0742
Description:

Target: scaffold0742; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 2732 - 2805
Alignment:
Q  9 caaatcatcattaacaatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||| |||||||||| |||||||| ||||| || | ||| ||||||||||| |||||||||| ||||    
T  2732 caaatcatcatcaacaatggttcacataattcctcaagaacaactcattaattatttcaacaacttgacgacac 2805  T

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Target: scaffold0100 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 27923 - 27875
Alignment:
Q  34 ataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||||||    
T  27923 ataatttctcaataacaactcatttattatttcgacaacttgacaacac 27875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 10470 - 10412
Alignment:
Q  24 aatggtttacataatttctcaataatatctcgttaattatttcgacaacttgacaacac 82  Q
    |||| |||| ||||||||||||||| | ||| || ||||||| ||||||||||||||||    
T  10470 aatgctttatataatttctcaataacaactcatttattattttgacaacttgacaacac 10412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 61475 - 61511
Alignment:
Q  1 attaacttcaaatcatcattaacaatggtttacataa 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  61475 attaacttcaaatcatcattaacaatgcttcacataa 61511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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