View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16789_high_12 (Length: 304)
Name: NF16789_high_12
Description: NF16789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16789_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 9961589 - 9961295
Alignment:
| Q |
1 |
aagttgaagcctataagtttcttagttatttttccttcacctttcatgcaaacttcgacattaaacactctctagagtagtttaggaacctgtagctgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9961589 |
aagttgaagcctataagtttcttagttatttttccttcacctttcatgcaaacttcgacattaaacactctctagagtagtttaggaacttgtagctgat |
9961490 |
T |
|
| Q |
101 |
aaacaacgtctaatcatcgaggcaaacgatgaatcaagcaaacagacaactaaccatgtaagcacatgactagttgagtaggcgcaatattatacacaac |
200 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9961489 |
aaacaacgtctaatcataggggcaaacgatgaatcaagcaaacagacaactaaccatgtaagcacatgactagttgagtaagcgcaatattatacacaac |
9961390 |
T |
|
| Q |
201 |
gacaacaaataagtaagtggtaatcaagagtttatttataaactcaaattcaccttttaagattaagtaaaatgtgatgtgataatgagaataat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9961389 |
gacaacaaataagtaagtggtaatcaagagtttatttataaactcaaattcaccttttaagattaagtaaaatgtgttgtgataatgagaataat |
9961295 |
T |
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