View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16789_high_1_N (Length: 447)
Name: NF16789_high_1_N
Description: NF16789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16789_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 8e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 35443205 - 35443390
Alignment:
| Q |
186 |
acaaacataaaa-aaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag |
284 |
Q |
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| T |
35443205 |
acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag |
35443304 |
T |
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| Q |
285 |
agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatatta |
370 |
Q |
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| T |
35443305 |
agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatatta |
35443390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 35442988 - 35443146
Alignment:
| Q |
30 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
129 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
130 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
188 |
Q |
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| T |
35443088 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
35443146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 364 - 447
Target Start/End: Complemental strand, 35443401 - 35443318
Alignment:
| Q |
364 |
aatattatctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaatt |
447 |
Q |
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| T |
35443401 |
aatattatctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaatt |
35443318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
35 |
accacttattttacataaatatatgtattt |
64 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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