View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16789_low_1 (Length: 850)
Name: NF16789_low_1
Description: NF16789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16789_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 414 - 834
Target Start/End: Original strand, 35291260 - 35291681
Alignment:
| Q |
414 |
ctgtgactttggctgaatcacattgcgcaactgtgatttcgatcatatctacattttttaaagcatcaacaaaatcaccacggagacgtgatttcggcaa |
513 |
Q |
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| T |
35291260 |
ctgtgactttggctgaatcacattgtgcaactgtgatttcgatcatatctacattttttaaagcatcaacaaaatcaccgtggagacgtgatttcggcaa |
35291359 |
T |
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| Q |
514 |
ggttttagaatttatgaaatgtggattcattttggaagaacaaatatcaaaataagggagatttgaaattgtactg-tagtagcagtacttttccattca |
612 |
Q |
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| T |
35291360 |
ggttttagaatttatgaaatgtcgattcattttggaagaacaaatatcaaaataagggagatttgaaattgtactggtagtagcagtacttttccattca |
35291459 |
T |
|
| Q |
613 |
cctatattatattttaagattttcaattatataacaagaatggtatttaatataacaatatgaaaatataaaattcttccttttaattattttacagaat |
712 |
Q |
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| T |
35291460 |
cctatattatattttaagattttcaattatataacaagaatggtatttaatataacaatatgaaaatataaaattcttccttttaattattttacagaat |
35291559 |
T |
|
| Q |
713 |
gtcagagaggcagagacttttgtgttacgttaccttccccgggccaggtatagtgggagtgggtaaggctagaacaggaaaccatgcttgcaacttgctt |
812 |
Q |
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| T |
35291560 |
gtcagagaggcagagacttttgtgttacgttaccttccccgggccaggtatagtgggagtgggtacggctagaacaggaaaccatgcttgcaacttgctt |
35291659 |
T |
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| Q |
813 |
aattttctgcaatctgatatgt |
834 |
Q |
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| T |
35291660 |
aattttctgcaatctgatatgt |
35291681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 35290846 - 35291061
Alignment:
| Q |
16 |
atgaatagccttttttccaaattttgctgcaatattaggagtgtgtataataaaatgcactagtattctaagtcatttctttctctttcatcctttagtc |
115 |
Q |
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| T |
35290846 |
atgaatagccttttttccaaattttgctgcaatattaggagtgtgtataataaaatgcactagtattctaagtcatttctttctctttcatcctttagtc |
35290945 |
T |
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| Q |
116 |
tcccttaagtcttagtctcttagagagattcttcagattgtattacacaggttacatgattaccaatatctatagatcagcacttatcattactgagaca |
215 |
Q |
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| T |
35290946 |
tcccttaagtcttagtctcttagggagattcttcagattgtattacacagattacatgattaccaatatctatagatcagcacttatcattactgagaca |
35291045 |
T |
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| Q |
216 |
taatataaagtatatt |
231 |
Q |
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| T |
35291046 |
taatataaagtatatt |
35291061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 262 - 413
Target Start/End: Original strand, 35291063 - 35291214
Alignment:
| Q |
262 |
tgtatatacctacataaacatacaaagcaaatacatctactatactatctgtgtctgtcgacctactcggtgtggctgttagttgagtaacgatcctctc |
361 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35291063 |
tgtatatacctacataaacatacaaagcaaacacatctactatactatctgtgtctgtcgacctactcggtgtggctgttagttgagtaacggtcctctc |
35291162 |
T |
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| Q |
362 |
tatttctcgaaagaaatgagaaatagagaacttcattactaatgaccataat |
413 |
Q |
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| T |
35291163 |
tatttctcgaaagaaatgagaaatagagaacttcattactaatgaccataat |
35291214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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