View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16789_low_2 (Length: 468)
Name: NF16789_low_2
Description: NF16789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16789_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 28988356 - 28987933
Alignment:
| Q |
11 |
acatcatcagccacaaaataacagggctcaaaatcagaacccggaagcatcattaacataatcaatgtacacaacctcagagaaaagaaagaagaaaagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28988356 |
acatcatcagccacaaaataacagggctcaaaatcagaacccagaagcatcattaacataatc---gtacacaacctcagagaaaagaaagaagaaaagg |
28988260 |
T |
|
| Q |
111 |
tatttttcccccaccacactacaattatttaaagctccaaaattctaacttagactttactagctacgaagcagacaccgacacgacactgacacggata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988259 |
tatttttcccccaccacactacaattatttaaagctccaaaattctaacttatactttactagctacgaagcagacaccgacacgacactgacacggata |
28988160 |
T |
|
| Q |
211 |
cgtcgacacaggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggatacaggaaacacctaatctaagaggtgtccgtgcttca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28988159 |
cgtcgacacaggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggacacaggaaacacctaatctaagaggtgtccgtgcttca |
28988060 |
T |
|
| Q |
311 |
gaacttactagtaacaactcactacctatgaaacactgacactgacacagctactaatttcagaaaatggaagtaattgaatgtaaccacacgctgacac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28988059 |
gaacttactagtaacaactcactacctatgaaacactgacactgacacagctactaattttagaaaatggaagtaattgaatgtaaccacacgctgacac |
28987960 |
T |
|
| Q |
411 |
aggttggacactaaacacatcttcaat |
437 |
Q |
| |
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| T |
28987959 |
aggttggacactaaacacatcttcaat |
28987933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 2468521 - 2468485
Alignment:
| Q |
365 |
taatttcagaaaatggaagtaattgaatgtaaccaca |
401 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
2468521 |
taatttaagaaaatggaagtaattgaatgtaaccaca |
2468485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 27131721 - 27131685
Alignment:
| Q |
365 |
taatttcagaaaatggaagtaattgaatgtaaccaca |
401 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
27131721 |
taatttaagaaaatggaagtaattgaatgtaaccaca |
27131685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 9018918 - 9018882
Alignment:
| Q |
365 |
taatttcagaaaatggaagtaattgaatgtaaccaca |
401 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||| |
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| T |
9018918 |
taatttgagaaaatgaaagtaattgaatgtaaccaca |
9018882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 44572683 - 44572654
Alignment:
| Q |
190 |
gacacgacactgacacggatacgtcgacac |
219 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44572683 |
gacacgacactgacacggatacgtcgacac |
44572654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 401
Target Start/End: Complemental strand, 38685340 - 38685311
Alignment:
| Q |
372 |
agaaaatggaagtaattgaatgtaaccaca |
401 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38685340 |
agaaaatggaagtaattgaatgtaaccaca |
38685311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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