View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_high_1 (Length: 854)
Name: NF16790_high_1
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 787; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 12 - 835
Target Start/End: Original strand, 51739500 - 51740323
Alignment:
| Q |
12 |
agagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtgtaatttttggtctatctgtctca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739500 |
agagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtgtaatttttggtctatctgtctca |
51739599 |
T |
|
| Q |
112 |
ttttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcatacacaagttcccctatggtcatcc |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739600 |
ttttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcatacacaagttcccctatggtcatcc |
51739699 |
T |
|
| Q |
212 |
gtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattgattgtagaaatgggttgcttattggtgtttaatat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739700 |
gtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtccgccgcattgattgtagaaatgggttgcttattggtgtttaatat |
51739799 |
T |
|
| Q |
312 |
gatggttaatacgaagatggatgataagaagtataatgcagcacaagcttcaaagggtttaagttgtctcattcttacaagttttgtggttcttatgaat |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739800 |
gatggttaatacgaagatggatgataagaagtataatgcggcacaagcttcaaagggtttaagttgtctcattcttacaagttttgtggttcttatgaat |
51739899 |
T |
|
| Q |
412 |
agatacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactattattcatcctctttattcttttaactacctcga |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
51739900 |
agatacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactattattcatcctctttattcttttaactacctcaa |
51739999 |
T |
|
| Q |
512 |
tgattatagaaatatggaattacaatagtattattcattgnnnnnnnattggattgctatttcctaaagaaggcaagactgctagaacgttgattcataa |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51740000 |
tgattatagaaatatggaattacaatagtattattcattgtttttttattggattgctatttcctaaagaaggcaaaactgctagaacgttgattcataa |
51740099 |
T |
|
| Q |
612 |
acttggttattcaatttataactttatacttccggtatattttggatacatgggtttacaatgtgacattataaatgcttttaagaaattgagtatgata |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740100 |
acttggttattcaatttataactttatacttccggtatattttggatacatgggtttacaatgtgacattataaatgcttttaagaaattgagtatgata |
51740199 |
T |
|
| Q |
712 |
accaatactgtcatattgattttgctgagcattggaagcaagcttggtggaactctcttagtttgtcattaccttcatattcctacaagtgaagggattt |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740200 |
accaatactgtcatattgattttgctgagcattggaagcaagcttggtggaactctcttagtttgtcattaccttcatattcctacaagtgaagggattt |
51740299 |
T |
|
| Q |
812 |
ttcttggatttatattgaacacta |
835 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
51740300 |
ttcttggatttatattgaacacta |
51740323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 415 - 835
Target Start/End: Original strand, 10200578 - 10200998
Alignment:
| Q |
415 |
tacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactattattcatcctctttattcttttaactacctcgatga |
514 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | || || ||| | ||| |||||| ||| || |
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| T |
10200578 |
tacttagccgtttggttaaactcaagaaatagaaaccaaaaatacctaaaagctactgaactattactaatactttttttgcttctaactagctcaatag |
10200677 |
T |
|
| Q |
515 |
ttatagaaatatggaattacaatagtattattcattgnnnnnnnattggattgctatttcctaaagaaggcaagactgctagaacgttgattcataaact |
614 |
Q |
| |
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|||||||||| | ||||||||||||||| ||| |||||||| | |||||||| ||||| || || |||||||| ||| | || ||||| |
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| T |
10200678 |
ttatagaaatttttggctacaatagtattattagttgtttcattattggattattgtttcctaaggaaggtaaaacagctagaacattgctacaaaaact |
10200777 |
T |
|
| Q |
615 |
tggttattcaatttataactttatacttccggtatattttggatacatgggtttacaatgtgacattataaatgcttttaagaaattgagtatgataacc |
714 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| |||||||| |||| |||||||||||| | ||||||| |||| | | ||| | | | || |
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| T |
10200778 |
tggttattcaatttataactttgtccttccagtatactttggatatttgggattacaatgtgacctcataaatgtgtttacaagactgaatcgaacagcc |
10200877 |
T |
|
| Q |
715 |
aatactgtcatattgattttgctgagcattggaagcaagcttggtggaactctcttagtttgtcattaccttcatattcctacaagtgaagggatttttc |
814 |
Q |
| |
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||| | ||||||||| ||| |||||||||| ||||| || || |||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
10200878 |
aatgtagccatattgatcttgttgagcattggtagcaaactcggcggaactcttatagtttgtcgttaccttcatattcctacaaatgaagggatttttc |
10200977 |
T |
|
| Q |
815 |
ttggatttatattgaacacta |
835 |
Q |
| |
|
|||| || || |||||||||| |
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| T |
10200978 |
ttggcttcatgttgaacacta |
10200998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 300
Target Start/End: Original strand, 10200362 - 10200481
Alignment:
| Q |
181 |
gtatcatacacaagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattgattg |
280 |
Q |
| |
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|||||||||||||| ||||| ||||| || |||||| | || || ||| | ||||| ||||| ||| |||| |||||||| |||||| | || |||||| |
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| T |
10200362 |
gtatcatacacaagctcccccatggtgattcgtttgacggcggagttacgatttgctgcatccgatatcgggcgaatcgcggtgtcttcagcgttgatta |
10200461 |
T |
|
| Q |
281 |
tagaaatgggttgcttattg |
300 |
Q |
| |
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|||||||| |||||||||| |
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| T |
10200462 |
cagaaatggcttgcttattg |
10200481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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