View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16790_high_3 (Length: 593)
Name: NF16790_high_3
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Complemental strand, 12626825 - 12626263
Alignment:
| Q |
14 |
gatatgaaggatatctaaaagaaaaatgctatttacagcaaagagctttgctatatcccgggaaagaaattaacacgaaatgtcacgaaagcggaatcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12626825 |
gatatgaaggatatctaaaagaaaaatgctatttacagcaaagagctttgctatatcctgcgaaagaaattaacacgaaatgtcacgaaagcagaatcag |
12626726 |
T |
|
| Q |
114 |
ccaatgataaaacagtgctttgcggaattatcccaaggtgtatttcattcaatcttcattattgacttccaccttattcccaccaacatgccgtaaattc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12626725 |
ccaatgataaaacagtgctttgcggaattatcccaaggtgtatttcattcaatcttcattattgacttccaccttattcccaccaacatgccgtaaattc |
12626626 |
T |
|
| Q |
214 |
cgcaaagcactgttttatagttggctgattccgcttttgtgatcatttcgcgttaatttcttttgcgagatatagcaaagctctatctaaaattgtatta |
313 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
12626625 |
cgcaaagca-tgttttatagttggctgattccgcttttgtgatcatttcgcgttaatttcttttgtggggtatagcaaagctctatctaaaattgtatta |
12626527 |
T |
|
| Q |
314 |
taaaacaaaaacgatctaaacaagtaaggtatcatcgtgaaacaaaagcacgttgaaaactcagttatttaagttcaagcaaaataattttacttatgaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12626526 |
taaaacaaaaacgatctaaacaagtaaggtatcatcgtgaaacaaaagcacgttgaaaactcagttatttaagttcaagcaaaataattttacttatgaa |
12626427 |
T |
|
| Q |
414 |
aatcgatataccgatttttaaatgacactgatatgttgaccaatgaccactaataattaaagaaataaatgtattgatatgtctatatcaccagacaagc |
513 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
12626426 |
aatcgatataccaatttttaaatgacactgatatgttgaccaatgaccactaataattaaagaaataaaagtattgatatgtctatatcaccag-caagc |
12626328 |
T |
|
| Q |
514 |
cttcaatagtgtcaacgttnnnnnnncaacaaagacgaagaagaaaacataaaaaggtaagaagt |
578 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12626327 |
cttccatagtgtcaacgttaaaaaaacaacaaagacgaataagaaaacataaaaaggtaagaagt |
12626263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 12626697 - 12626784
Alignment:
| Q |
209 |
aattccgcaaagcactgttttatagttggctgattccgcttttgtgatcatttcgcgttaatttcttttgcgagatatagcaaagctct |
297 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
12626697 |
aattccgcaaagcactgttttatcattggctgattctgctttcgtga-catttcgtgttaatttctttcgcaggatatagcaaagctct |
12626784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 12626543 - 12626630
Alignment:
| Q |
55 |
agagctttgctatatcccgggaaagaaattaacacgaaatg-tcacgaaagcggaatcagccaatgataaaacagtgctttgcggaatt |
142 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||||||| |||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
12626543 |
agagctttgctataccccacaaaagaaattaacgcgaaatgatcacaaaagcggaatcagccaactataaaaca-tgctttgcggaatt |
12626630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University