View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16790_high_4 (Length: 576)

Name: NF16790_high_4
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16790_high_4
NF16790_high_4
[»] chr1 (9 HSPs)
chr1 (10-576)||(1729605-1730172)
chr1 (444-501)||(15687142-15687199)
chr1 (450-502)||(7218142-7218194)
chr1 (447-498)||(36151577-36151628)
chr1 (447-477)||(7200935-7200965)
chr1 (447-512)||(2773662-2773727)
chr1 (430-502)||(5421988-5422060)
chr1 (458-502)||(30371106-30371150)
chr1 (277-325)||(41640515-41640562)
[»] chr2 (6 HSPs)
chr2 (451-510)||(41674287-41674346)
chr2 (447-512)||(14209224-14209289)
chr2 (446-502)||(26372804-26372860)
chr2 (428-490)||(40758951-40759013)
chr2 (447-500)||(656847-656900)
chr2 (428-473)||(1112019-1112064)
[»] chr8 (2 HSPs)
chr8 (429-502)||(11000629-11000702)
chr8 (428-477)||(10218842-10218891)
[»] chr3 (6 HSPs)
chr3 (447-502)||(32703085-32703140)
chr3 (450-502)||(25447312-25447364)
chr3 (304-346)||(21146781-21146823)
chr3 (447-512)||(2128309-2128374)
chr3 (447-512)||(42808926-42808991)
chr3 (447-508)||(42809248-42809309)
[»] scaffold0024 (2 HSPs)
scaffold0024 (463-512)||(21336-21385)
scaffold0024 (463-512)||(58900-58949)
[»] chr5 (6 HSPs)
chr5 (447-511)||(11054133-11054196)
chr5 (447-511)||(11615455-11615519)
chr5 (447-477)||(3952045-3952075)
chr5 (447-512)||(465901-465966)
chr5 (376-416)||(6593178-6593218)
chr5 (462-502)||(12425533-12425573)
[»] chr7 (2 HSPs)
chr7 (451-502)||(48157188-48157239)
chr7 (447-491)||(28178916-28178960)
[»] chr6 (3 HSPs)
chr6 (447-502)||(9093624-9093679)
chr6 (447-502)||(1810371-1810423)
chr6 (447-503)||(31624205-31624261)
[»] chr4 (4 HSPs)
chr4 (381-476)||(1404304-1404398)
chr4 (375-430)||(39178373-39178428)
chr4 (451-512)||(47800581-47800642)
chr4 (286-346)||(38879186-38879246)


Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 10 - 576
Target Start/End: Complemental strand, 1730172 - 1729605
Alignment:
Q  10 agaagcaaaggtgctacatagtacacaattagttctcaatttagcaaataaatcatgtatatccaagtaaaaatgtctttgaaaaagcacacacaaaaag 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1730172 agaaacaaaggtgctacatagtacacaattagttctcaatttagcaaataaatcatgtatatccaagtaaaaatgtctttgaaaaagcacacacaaaaag 1730073  T
Q  110 tgttaaaagaagttctcatcattggataaataatcatgaatacaaatatctgaaaacaggagacgaagtgaaaagaaagtgacaaatttgtccctaaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1730072 tgttaaaagaagttctcatcattggataaataatcatgaatacaaatatctgaaaacaggagacgaagtgaaaagaaagtgacaaatttgtccctaaaag 1729973  T
Q  210 tgagtatagtcccatgacagacagtagcttaattagtgaactaagagacacggaaggcgttgtaagaaggaggtccaaggttcaaacctaggacactagc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1729972 tgagtatagtcccatgacagacagtagcttaattagtgaactaagagacacagaaggcgttgtaagaaggaggtccaaggttcaaacctaggacactagc 1729873  T
Q  310 ataatcactaacttactaatatttgtctatcaaaaaactaaaagcaaatacgattatgctttagatcctgcttggataaacaacttaatttacagcgtat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1729872 ataatcactaacttactaatatttgtctatcaaaaaactaaaagcaaatacgattatgctttagatcctgcttggataaacaacttaatttacagcgtat 1729773  T
Q  410 atcataagttcttatcatatatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcata 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1729772 atcataagttcttatcatatatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcata 1729673  T
Q  510 agcactatgaagcattgacacggacacggcacaaaaatatgaaggaa-aaaatgtaaatttgcatatc 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1729672 agcactatgaagcattgacacggacacggcacaaaaatatgaaggaaaaaaatgtaaatttgcatatc 1729605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 501
Target Start/End: Complemental strand, 15687199 - 15687142
Alignment:
Q  444 tacaagctatttccataataaaagataaaataaactgatattgttttcgtataagcta 501  Q
    ||||||||||||| |||| |||| |||||||||| | | |||||||||||||||||||    
T  15687199 tacaagctatttctataacaaaatataaaataaagttaaattgttttcgtataagcta 15687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 7218194 - 7218142
Alignment:
Q  450 ctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||||||||||||| ||||||||| | | ||||||||| ||||||||||    
T  7218194 ctatttccataataaaaggtaaaataaagtcaaattgttttcatataagctat 7218142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 498
Target Start/End: Complemental strand, 36151628 - 36151577
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataag 498  Q
    |||||||||| |||| ||||||||||||||| | | ||||||||||||||||    
T  36151628 aagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataag 36151577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 477
Target Start/End: Complemental strand, 7200965 - 7200935
Alignment:
Q  447 aagctatttccataataaaagataaaataaa 477  Q
    |||||||||||||||||||||||||||||||    
T  7200965 aagctatttccataataaaagataaaataaa 7200935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 2773727 - 2773662
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    ||||||||||||||| | ||||||||||||  | | ||||||||  |||||||| |||||||||||    
T  2773727 aagctatttccataacagaagataaaataatttcaaattgttttaatataagctgttttcataagc 2773662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 5422060 - 5421988
Alignment:
Q  430 atataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||  ||| ||| ||||||||||||| | ||||||||||||| | | | ||||||||| ||||||||||    
T  5422060 atataagtgcttattataagctatttccatgacaaaagataaaatatagtcaaattgttttcttataagctat 5421988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 30371106 - 30371150
Alignment:
Q  458 ataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||| ||||||||||||||||| | ||||||||| ||||||||||    
T  30371106 ataacaaaagataaaataaactcaaattgttttcatataagctat 30371150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 41640562 - 41640515
Alignment:
Q  277 aggaggtccaaggttcaaacctaggacactagcataatcactaacttac 325  Q
    ||||||||||||||||||||||| || |||| ||||| |||||||||||    
T  41640562 aggaggtccaaggttcaaaccta-gaaactaacataaccactaacttac 41640515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 510
Target Start/End: Complemental strand, 41674346 - 41674287
Alignment:
Q  451 tatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataa 510  Q
    |||||| |||||||||||||||||||| | | |||||||| |||||||||||||||||||    
T  41674346 tatttcaataataaaagataaaataaaatcagattgtttttgtataagctattttcataa 41674287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 14209224 - 14209289
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    |||||||||| |||| ||||||||||||||| | | | ||||||| |||||||||||| |||||||    
T  14209224 aagctatttcaataacaaaagataaaataaattcaaactgttttcatataagctatttccataagc 14209289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 26372860 - 26372804
Alignment:
Q  446 caagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||||||||||| ||||||||||||||| | |||||| | |||||| ||||||    
T  26372860 caagctatttccataacaaaagataaaataaagtcatattgctctcgtatcagctat 26372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 490
Target Start/End: Original strand, 40758951 - 40759013
Alignment:
Q  428 atatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgtttt 490  Q
    |||||||||  ||| ||| ||||||||||||||| ||||||||||||||| | | ||||||||    
T  40758951 atatataagaccttattataagctatttccataacaaaagataaaataaagtcaaattgtttt 40759013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Complemental strand, 656900 - 656847
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagct 500  Q
    |||||||||| |||| ||||||||||||| | | | ||||||||||||||||||    
T  656900 aagctatttctataacaaaagataaaatataatcaaattgttttcgtataagct 656847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 1112064 - 1112019
Alignment:
Q  428 atatataagcacttgttacaagctatttccataataaaagataaaa 473  Q
    |||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  1112064 atatataaacacttattataagctatttccataagaaaagataaaa 1112019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 502
Target Start/End: Complemental strand, 11000702 - 11000629
Alignment:
Q  429 tatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    ||||| ||| ||| ||| ||||||||||||||| ||||||||||||||| | | |||||||||| |||||||||    
T  11000702 tatatcagcgcttattataagctatttccataacaaaagataaaataaagtcaaattgttttcgaataagctat 11000629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 10218842 - 10218891
Alignment:
Q  428 atatataagcacttgttacaagctatttccataataaaagataaaataaa 477  Q
    |||||||||| ||||||| ||||| ||||||||| |||||||||||||||    
T  10218842 atatataagctcttgttataagctgtttccataacaaaagataaaataaa 10218891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 502
Target Start/End: Original strand, 32703085 - 32703140
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||||| || ||||||||||||||||||| | ||||||||| ||||||||||    
T  32703085 aagctatttctattataaaagataaaataaactcaaattgttttcatataagctat 32703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 25447364 - 25447312
Alignment:
Q  450 ctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    ||||||| ||| |||||||||||||||||| | |||||||| |||||||||||    
T  25447364 ctatttctatagtaaaagataaaataaacttaaattgtttttgtataagctat 25447312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 21146781 - 21146823
Alignment:
Q  304 actagcataatcactaacttactaatatttgtctatcaaaaaa 346  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  21146781 actaacataatcactaattcactaatatttgtctatcaaaaaa 21146823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 2128374 - 2128309
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    |||||||||| |||| ||||||||||||||| | | ||||||||  | |||||| |||||||||||    
T  2128374 aagctatttctataacaaaagataaaataaagttaaattgttttactgtaagctgttttcataagc 2128309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 42808926 - 42808991
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    ||||| |||| |||| ||||||||||||||| | | ||||||||  |||||||| |||||||||||    
T  42808926 aagctgtttctataacaaaagataaaataaagttaaattgtttttatataagctgttttcataagc 42808991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 42809248 - 42809309
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcat 508  Q
    |||||||||| |||| ||||||||||||| | | | ||||||||| |||||||| |||||||    
T  42809248 aagctatttctataacaaaagataaaatatagttaaattgttttcatataagctgttttcat 42809309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 21385 - 21336
Alignment:
Q  463 aaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    ||||||||||||||| | | |||||||||||||||||| |||||||||||    
T  21385 aaaagataaaataaagttaaattgttttcgtataagctgttttcataagc 21336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 58900 - 58949
Alignment:
Q  463 aaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    ||||| ||||||||| | | |||||||||||||||||| |||||||||||    
T  58900 aaaagttaaaataaagttaaattgttttcgtataagctgttttcataagc 58949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 11054133 - 11054196
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataag 511  Q
    |||||||||| |||||||||||||||||||| | || | ||||||||||||| | ||||||||||    
T  11054133 aagctatttctataataaaagataaaataaagtaat-tagttttcgtataagatgttttcataag 11054196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 11615455 - 11615519
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataag 511  Q
    |||||||||  |||| ||||||||||||||| | | ||||||| |||||||||| ||||||||||    
T  11615455 aagctatttttataacaaaagataaaataaagtcaaattgtttacgtataagctgttttcataag 11615519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 477
Target Start/End: Original strand, 3952045 - 3952075
Alignment:
Q  447 aagctatttccataataaaagataaaataaa 477  Q
    |||||||||||||||||||||||||||||||    
T  3952045 aagctatttccataataaaagataaaataaa 3952075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 465901 - 465966
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    |||||||||| || | ||||||||||||||| | | |||||||| ||||||||| ||| |||||||    
T  465901 aagctatttctatgacaaaagataaaataaagttaaattgtttttgtataagctgtttacataagc 465966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 6593178 - 6593218
Alignment:
Q  376 cctgcttggataaacaacttaatttacagcgtatatcataa 416  Q
    |||| ||||||||||||||||||||||||| |||| |||||    
T  6593178 cctgtttggataaacaacttaatttacagcttatagcataa 6593218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 502
Target Start/End: Original strand, 12425533 - 12425573
Alignment:
Q  462 taaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  12425533 taaaagataaaataaagttaaattgttttcgtataagctat 12425573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 48157239 - 48157188
Alignment:
Q  451 tatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||| |||||||||||||||||||| ||| ||||||||  ||||||||||    
T  48157239 tatttctataataaaagataaaataaagtgaaattgttttaatataagctat 48157188  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 28178916 - 28178960
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttc 491  Q
    |||||||||| |||| ||||||||||||||| | |||||||||||    
T  28178916 aagctatttctataacaaaagataaaataaagtcatattgttttc 28178960  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 9093679 - 9093624
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||||| |||  ||||||||||||||| | | ||||||||||||||||||||    
T  9093679 aagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctat 9093624  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 1810423 - 1810371
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 502  Q
    |||||||||| |||| |||||||||||||||   ||||||||||| ||||||||||    
T  1810423 aagctatttctataacaaaagataaaataaa---atattgttttcatataagctat 1810371  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 503
Target Start/End: Original strand, 31624205 - 31624261
Alignment:
Q  447 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctatt 503  Q
    |||||||||| |||| ||||||||||||||  | | ||||||||||||||| |||||    
T  31624205 aagctatttctataacaaaagataaaataagtttaaattgttttcgtataatctatt 31624261  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 476
Target Start/End: Original strand, 1404304 - 1404398
Alignment:
Q  381 ttggataaacaacttaatttacagcgtatatcataagttcttatcatatatataagcacttgttacaagctatttccataataaaagataaaataa 476  Q
    ||||||||||| ||||||| |  |||||||  |||||| || |||||||||| | ||  || ||| |||||||||| |||||||||||||||||||    
T  1404304 ttggataaacagcttaattaagtgcgtatactataagtgctaatcatatataaatgctttt-ttataagctatttctataataaaagataaaataa 1404398  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 39178428 - 39178373
Alignment:
Q  375 tcctgcttggataaacaacttaatttacagcgtatatcataagttcttatcatata 430  Q
    ||||| |||||||||||||||| |||||||| ||||  |||||| |||||||||||    
T  39178428 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatata 39178373  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 47800581 - 47800642
Alignment:
Q  451 tatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 512  Q
    |||||| |||| ||||||||||||||| | | | |||||| ||||||||| |||||||||||    
T  47800581 tatttctataacaaaagataaaataaagttaaaatgtttttgtataagctgttttcataagc 47800642  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 38879246 - 38879186
Alignment:
Q  286 aaggttcaaacctaggacactagcataatcactaacttactaatatttgtctatcaaaaaa 346  Q
    |||||||||||||| || |||| |||||  ||||||||||||  ||||||||||| |||||    
T  38879246 aaggttcaaacctaagaaactaacataacaactaacttactagcatttgtctatccaaaaa 38879186  T

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