View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_10 (Length: 448)
Name: NF16790_low_10
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 44 - 434
Target Start/End: Original strand, 26491135 - 26491525
Alignment:
| Q |
44 |
tgaagtgaacttatgactgcctatgtggtgcaaatagatttagaataaggatgacatcattttgtgcaacgtatagaggttaatgagaatcatatttatg |
143 |
Q |
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| T |
26491135 |
tgaagtgaacttacgactgcctatgtggtgcaaatagatttggaataaggatgacatcattttgtgcaacgtatagaggtcaatgagagtcatatttatg |
26491234 |
T |
|
| Q |
144 |
ctttaatattaaaatgttacacacatatatgtgttgcctacactacttaaaattcctggatccgtcttaacaccgatattatacatgaattaaatccata |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
26491235 |
ctttaatattaaaatgttacacacatatatgtgttgcctacactacttaaaattcctgaatccatcttaacaccgatattatacatgaattaaatccata |
26491334 |
T |
|
| Q |
244 |
aactgatgtcttagcttagcatatgtcctcagacataatttctatttcagcccaccaaagaggggatgattttggagttgctccatcaggtcccatatca |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26491335 |
aactgatgtcttagcttagcatatgtcctcagacataatttctatttcagcccaccaaagaggggatgattttggagttgctccatcaggccccatatca |
26491434 |
T |
|
| Q |
344 |
gtaatctccttcaacttagatgtaatctctttcattgatggtcttgtttcttgatcaagatctacacaattgttaatcacttcacaccatt |
434 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26491435 |
gtaatctccttcaatttagatgtaatctctttcattgatgaccttgtttcttgatcaagatctacacaattgttaatcacttcacaccatt |
26491525 |
T |
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