View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_12 (Length: 404)
Name: NF16790_low_12
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 1729626 - 1729240
Alignment:
| Q |
1 |
aaaaaatgtaaatttgcatatcttatctatactgctaccaaattggtgaaggtaaaagttattatgtgtgtgtaatatgcataccaatgtaatgaaggta |
100 |
Q |
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| T |
1729626 |
aaaaaatgtaaatttgcatatcttatctatactgctaccaaattggtgaaggtaaaagttgttatgtgtgtgtaatatgcataccaatgtaatgaaggta |
1729527 |
T |
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| Q |
101 |
agtgaacaaaccagtgggtgaaattttggaaggaatgtgtggcccagaattgttgtccatgtccataccatttgttacacaaaaggattgcttttgctgc |
200 |
Q |
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| T |
1729526 |
agtgaacaaaccagtgggtgaaattttggaaggaatgtgtggcccagaattgttgtccatgtccataccatttgttacacaaaaggattgcttttgctgc |
1729427 |
T |
|
| Q |
201 |
aaaaagaaagaaccaaactattaatggaacataaaaatcagctccaataactgtgaaatcttgaaattatggaatattttttagttagtaatgataataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729426 |
aaaaagaaagaaccaaactattaatggaacataaaaatcagctccaataactgtgaaatcttgaaattatggaatattttttagttagtaatgataataa |
1729327 |
T |
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| Q |
301 |
tttgattgcagagctagtggaaaagtgaaggg-aaataaaacattggttacataatcacccatcaatcaatgaatctgtgtggtaag |
386 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729326 |
tttgattgcagagctagtggaaaagtgaagggaaaaaaaaacattggttacataatcacccatcaatcaatgaatctgtgtggtaag |
1729240 |
T |
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