View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_15 (Length: 335)
Name: NF16790_low_15
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 43163616 - 43163905
Alignment:
| Q |
1 |
tatcagcagttgctaatgtgaacattatatgctgagttgcatttccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctgtaat |
100 |
Q |
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| T |
43163616 |
tatcagcagttgctaatgtgaacattatatgctgagttgcatttccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctgtaat |
43163715 |
T |
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| Q |
101 |
tgtttttgctactaaaacatacattctggatttccggtgaatgatattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgtagatgcatgaa |
200 |
Q |
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| T |
43163716 |
tgtttttgctactaaaacatacattctggatttccagtgaatgataatggaacgattgttgttgtatgtagcgaacaaaaacatcacttagatgcatgaa |
43163815 |
T |
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| Q |
201 |
ctattaacaattgttagatcttgcgtttgtaggaaaacatgggtggattaaaataagaaggatcac--tacagtgagatacttcccaatg |
288 |
Q |
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| T |
43163816 |
ctattaacaattgttagatcttgcgtttgtaggaaaacatgggtggattaaaataagaaggatcactatatagtgagatacttcccaatg |
43163905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 51466647 - 51466770
Alignment:
| Q |
136 |
ggtgaatgatattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgtagatgcatgaactattaa-caattgttagatcttgcgtttgtagga |
234 |
Q |
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||||||| |||||||||| ||||| | ||||| | ||||||||| |||||| ||||| | ||||| || |||| |||||||||||| |||| |||| |
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| T |
51466647 |
ggtgaattatattggaacaagtgttgctatatgtggtgaacaaaaatatcacgaagatgaactaactaataggcaatagttagatcttgcatttggagga |
51466746 |
T |
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| Q |
235 |
aaacatgggtggattaaaataaga |
258 |
Q |
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| T |
51466747 |
aaacatgggtggataaaaataaga |
51466770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 51464610 - 51464662
Alignment:
| Q |
44 |
tccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctg |
96 |
Q |
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| T |
51464610 |
tccttgttgcagcatgttttacataatgtgggaaatgttcatttgatgtcctg |
51464662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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