View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_16 (Length: 329)
Name: NF16790_low_16
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 25488698 - 25488489
Alignment:
| Q |
106 |
attgttgtaaacattgtcttcacgatgagggtaactttggtacttgtagtttgatagattgagaacatgaatttctttctaaactctatgttgagaatct |
205 |
Q |
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| T |
25488698 |
attgttgtaaacattgtcttcacgatgagggtaactttggtacttgtagtttgatagattgagaacatgaatttctttctaaactctatgttgagaatct |
25488599 |
T |
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| Q |
206 |
ttcattgacactgaatttgttctcatacagttctgaattaccttagttttactagatattgacttgtggtttaatgcaattgaagaaaatatcactccca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25488598 |
ttcattgacactgaatttgttctcatacagttctgaattaccttagttttactagatattgacttgtggtttaatgcaattgaagaaaatatcactccca |
25488499 |
T |
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| Q |
306 |
tctttatttt |
315 |
Q |
| |
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|||||||||| |
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| T |
25488498 |
tctttatttt |
25488489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 25799123 - 25798859
Alignment:
| Q |
1 |
tcgtgtttgtgtcgatttgacctcacaaaatggagagctatacttgg------cacttccattgtcgttgtgcagtatattttctttctacaagtaccaa |
94 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25799123 |
tcgtgtctgtgtcaatttgacctcacaaaatggagagctatacttagagttagcacctccattgtcgttgtgcagtatattttctttctacaagtaccaa |
25799024 |
T |
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| Q |
95 |
catgtctcagaattgttgtaaacattgtcttcacgatgagggtaactttggtacttgtagtttgatagattgagaacatgaatttctttctaaactctat |
194 |
Q |
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| T |
25799023 |
catgtctcagtattgttgtaaacattgtcttcacgatgcgggtaactttggtacttgtagtttgatagattgagaacatgaatttctttctaaattctat |
25798924 |
T |
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| Q |
195 |
gttgagaatctttcattgacactgaatttgttctcatacagttctgaattaccttagttttacta |
259 |
Q |
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| T |
25798923 |
gttgagaatctttcattgacactgaatttattctcagacagttctgaattaccttagttttacta |
25798859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 25384952 - 25384780
Alignment:
| Q |
96 |
atgtctcagaattgttgtaaacattgtcttcacgatgagggtaactttggtacttgtagtttgatagattgagaacatgaatttctttctaaactctatg |
195 |
Q |
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| T |
25384952 |
atgtctcagaattgttgtaaacattgtcttcaggatgacggtaactatggtaccagtagtttgatggattaagaacacgaatttctttctaaactctatg |
25384853 |
T |
|
| Q |
196 |
ttgagaatctttcattgacactgaatttgttctcatacagttctgaattaccttagttttactagatattgactt |
270 |
Q |
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| T |
25384852 |
ttgagattctttc--taacactgaatttgttctcagacagttctcaaaaaccttagttttattagatatttactt |
25384780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25488770 - 25488696
Alignment:
| Q |
1 |
tcgtgtttgtgtcgatttgacctcacaaaatggagagctatacttggcacttccattgtcgttgtgcagtatatt |
75 |
Q |
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| T |
25488770 |
tcgtgtctgtgtcgatttgacctcacaaaatggagagctatacttggcacttccattttcgttgtgcagtatatt |
25488696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 30162766 - 30162902
Alignment:
| Q |
114 |
aaacattgtcttcacgatgagggtaactttggtacttgtagtttgatagattgagaacatgaatttctttctaaactctatgttgagaatctttcattga |
213 |
Q |
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|||||||||||| | |||||| | || ||||||||||||||||| || ||||||| ||| ||||||||||| ||||||||||||||| |||| | |||| |
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| T |
30162766 |
aaacattgtctttaggatgagagaaattttggtacttgtagtttaatgtattgagagcatcaatttctttctgaactctatgttgagattcttcctttga |
30162865 |
T |
|
| Q |
214 |
cactgaatttgttctcatacagttctgaattacctta |
250 |
Q |
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| T |
30162866 |
caatgaatttgttctcatacagttctcaattacctta |
30162902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 30163132 - 30163180
Alignment:
| Q |
267 |
acttgtggtttaatgcaattgaagaaaatatcactcccatctttatttt |
315 |
Q |
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| T |
30163132 |
acttgtggtttaatgctattgaagaaaatatttcttccatctttatttt |
30163180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 13695221 - 13695347
Alignment:
| Q |
71 |
atattttctttctacaagtaccaacatgtctcagaattgttgtaaacattgtcttcacgatgagggtaactttggtacttgtagtttgatagattgagaa |
170 |
Q |
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||||||||||||| |||||||||| | |||| ||||| |||||| ||| |||| | || |||||||||||||||||||||| |||||| |||||| || |
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| T |
13695221 |
atattttctttctgcaagtaccaaaaagtcttggaattcttgtaagcatggtctctaggacgagggtaactttggtacttgtaatttgatggattgaaaa |
13695320 |
T |
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| Q |
171 |
catgaatttctttctaaactctatgtt |
197 |
Q |
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|| |||||||||||| ||||| ||||| |
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| T |
13695321 |
caggaatttctttctcaactcgatgtt |
13695347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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