View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_18 (Length: 304)
Name: NF16790_low_18
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 26735376 - 26735090
Alignment:
| Q |
1 |
ttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcgt |
100 |
Q |
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| T |
26735376 |
ttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcgt |
26735277 |
T |
|
| Q |
101 |
catgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735276 |
catgaatctaatctcatcagggattttcccagatatgctattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctca |
26735177 |
T |
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| Q |
201 |
ccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccggtgagattattg |
287 |
Q |
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| T |
26735176 |
ccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccagtgagattattg |
26735090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 26727062 - 26726780
Alignment:
| Q |
1 |
ttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcgt |
100 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
26727062 |
ttcccgcaaatgaacggtcgttgaagaccaaaaactgaccaccggtggggacaattccggtgaaattgttgtaagataaatccagcgtcgttagactcat |
26726963 |
T |
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| Q |
101 |
catgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctca |
200 |
Q |
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|||||||||||| |||| ||||||| ||| |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
26726962 |
catgaatctaatatcattggggatttgccccgatatgctattatgcgaaacattcaaaatgtttagcaccttcagattcttcatccctttaggaacctca |
26726863 |
T |
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| Q |
201 |
ccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccggtgagatt |
283 |
Q |
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||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26726862 |
ccggtaagcatgtttaggctgaagtcaacggctgtcaatgtactacattgagtaaccgtctttggaattccaccagtgagatt |
26726780 |
T |
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