View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16790_low_2 (Length: 705)
Name: NF16790_low_2
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 19 - 694
Target Start/End: Original strand, 27670352 - 27671028
Alignment:
| Q |
19 |
agtagttgcagaagcttcgccggaaaactcgtctgagttgggtgtttcgtttttctgatcgatgagttgaatttatgaaacatgaaaaagttttaaaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
27670352 |
agtagttgcagaagcttcgccggaaaactcgtctgagttgggtgtttcgtttttctgatcgatgagttgaatttatgaatcatgaaaaagtttaaaaaaa |
27670451 |
T |
|
| Q |
119 |
ttcaaaggaaagtgtatttatatggcataatttttgtttgtggagcaattgtgccggagcttacacattttaaatgtgtagaagtgggttgtcaggagtt |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| | || |
|
|
| T |
27670452 |
ttcaaaggaaagt--atttatatggcatattttttgtttgtggagcaattgtgtcggagcttacacgttttaaatgtgtaggagtgggttgtcagaaatt |
27670549 |
T |
|
| Q |
219 |
tgaactcgactattccatatattatacattgttactaccaactaa----agcccagagattaagagattaattatatgacttttatttcacaaaaattct |
314 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27670550 |
cgaactcgactatttcatatattatacattgttactaccaactaacttaagcccagagattaagagattaattatatgacttttatttcacaaaaattct |
27670649 |
T |
|
| Q |
315 |
aacacttgctaaatttagatatgttttatctaactaaaatgtgcagttataaagtaagnnnnnnnnnntcttatcaaagagaaaacaagtctttttctca |
414 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27670650 |
aacacttgctaaatttacatatgttttatctaactaaaatgtgcagttataaagtaag-aaaaaaaaatcttatcaaagagaaaacaagtctttttctca |
27670748 |
T |
|
| Q |
415 |
tagaaaaaatagatatatttaatcactcatgatttgatttattatgcatttgcaagtaatattaaatattaatttattttactcatgagtgatattactt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27670749 |
tagaaaaaatagatatatttaatcactcatgatttgatttattatgcatttgcaagtaatattaaatattaatttattttactcatgaatgatattactt |
27670848 |
T |
|
| Q |
515 |
attttattctttaaaacaagttgattatgctccctcnnnnnnnntaaaatttgattatgttatatctctatggacaccaatagtcttttttaatatcctc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27670849 |
attttattctttaaaacaagttgattatgctccctcaaaaaaaaaaaaagttgattatgttatgtctctatggacaccaatagtcttttttaatatcctc |
27670948 |
T |
|
| Q |
615 |
gtacaatttggagacaccataccacatgaaagtgactttcatgagcttcatccaatattactctcctcaattcttctcac |
694 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27670949 |
gtacaatttggagataccataccacatgaaagtgactttcatgagcttcatccaatattactctcctcaattcttctcac |
27671028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 1368153 - 1368202
Alignment:
| Q |
174 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
1368153 |
ggagctcacacattttaaatgtggagaagtggggtgtctggagtttgaac |
1368202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 33810744 - 33810695
Alignment:
| Q |
174 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
33810744 |
ggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaac |
33810695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 33372968 - 33373001
Alignment:
| Q |
174 |
ggagcttacacattttaaatgtgtagaagtgggt |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
33372968 |
ggagcttacacattttaaatgtggagaagtgggt |
33373001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 14795215 - 14795166
Alignment:
| Q |
174 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
14795215 |
ggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaac |
14795166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 46767447 - 46767398
Alignment:
| Q |
174 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
46767447 |
ggagctcacacattttaaatgtggagaagtgggatgtccggggtttgaac |
46767398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 18254693 - 18254644
Alignment:
| Q |
174 |
ggagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||| |||||| |||| |
|
|
| T |
18254693 |
ggagctcacacattttaaatgtgaagaagtggggtgtctggagttcgaac |
18254644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 44898449 - 44898497
Alignment:
| Q |
175 |
gagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||| |||||| |||| |
|
|
| T |
44898449 |
gagctcacacattttaaatgtggagaagtggggtgtccggagttcgaac |
44898497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 624583 - 624535
Alignment:
| Q |
175 |
gagcttacacattttaaatgtgtagaagtgggttgtcaggagtttgaac |
223 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||| ||| |||| |
|
|
| T |
624583 |
gagctcacacattttaaatgtggagaagtggggtgtcaggggttcgaac |
624535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University