View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_20 (Length: 269)
Name: NF16790_low_20
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 7838103 - 7838343
Alignment:
| Q |
17 |
attatgttgtttgttagtataagctgacttaaggattagggtagctagtaacaatatttcatgcgtaatccatcattgaggacccttttgctattttaat |
116 |
Q |
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| T |
7838103 |
attatgttgtttgttagtataagctgactta-ggattagggtagctagtaacaatatttcatgcgtaatccatcattgaggacccttttgctattttaat |
7838201 |
T |
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| Q |
117 |
aatggaaattggaagccttggttcttgagcctattgggtttctatggtaatcaatgttaaaggaaataggatcccaccacaattttgtcctctcatatag |
216 |
Q |
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| T |
7838202 |
aatggaaattggaagccttggttcttgagcctattgggtttatatggtaatcaatgttaaaggaaataggatcccaccacaattttgtcctctcatatag |
7838301 |
T |
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| Q |
217 |
gacagataccgacaaatgatttaggagacaatacccgttctt |
258 |
Q |
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| T |
7838302 |
gacagataccgacaaatgatttaggagacaatacccgttctt |
7838343 |
T |
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