View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_3 (Length: 685)
Name: NF16790_low_3
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 10831504 - 10832010
Alignment:
| Q |
1 |
tgtctgggggtgcataggtttatgtaggagatgttcacgtgtgtattcgatcgtgtagttttgtttttggtgctgcactcttctcttctgtggaacatcc |
100 |
Q |
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| T |
10831504 |
tgtctgggggtgcataggtttatgtaggagatgttcacgtgtgtattcgatcgtgtagttttgtttttggtgctgcactcttctcttctgtggaacatcc |
10831603 |
T |
|
| Q |
101 |
atgttggttctgttttggagtctatatgattgtagcatggactttctgtcgtaggagtctaagattgaacaaattaggtggtcaaatcagctatcaaagg |
200 |
Q |
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| T |
10831604 |
atgttggttctgttttggagtctatatgattgtagcatggactttctgtcgtaggagtctaagattgaacaaattaggtggtcaaatcagctatcaaagg |
10831703 |
T |
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| Q |
201 |
aactgtgtttaatatttgtgtcgtcggatctagtccttgtgtcgctttcatgagctgctagaaggattttggttgtaattcctgagctggtttaatggaa |
300 |
Q |
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| T |
10831704 |
aactgtgtttaatatttgtgtcgtcggatctagtccttgtgtcgctttcatgagctgctagaaggattttggttgtaattcctgagctggtttaatggaa |
10831803 |
T |
|
| Q |
301 |
cgcgggatttgaaatgtgtatacggaatttgtcaaatacgctttggttttgataggaagtattactatgggagcatgaaggctctttatattcggtgata |
400 |
Q |
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| T |
10831804 |
cgcgggatttgaaatgtggatacggaatttgtcaaatacgctttggttttgataggaagtattactatgggagcatgaaggctctttatattcggtgata |
10831903 |
T |
|
| Q |
401 |
gtagtttgtttattttgatgtattttattaggtcctgtaaaggtttaggcctttggtattggtgtaattaacattctaatcctagtacaacttgtgcaag |
500 |
Q |
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| T |
10831904 |
gtagcttgtttattttgatgtattttattaggtcctgtaaaggtttaggcctttggtattggtgtaattaacattctaatcctagtacaacttgtgcaag |
10832003 |
T |
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| Q |
501 |
gattagt |
507 |
Q |
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| T |
10832004 |
gattagt |
10832010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 577 - 666
Target Start/End: Original strand, 10832080 - 10832169
Alignment:
| Q |
577 |
gcttggttcgctattcctgcactgcatttatttggaattaggttatacttgttctatacttagccaattggaaagagacgatggccaccg |
666 |
Q |
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| T |
10832080 |
gcttggttcgctattcctgcactgcatttatttggaattaggttatacttgttctatacttagccaattggaaagagacgatggccaccg |
10832169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 34681782 - 34681883
Alignment:
| Q |
57 |
agttttgtttttggtgctgcactcttctctt-ctgtggaacatccatgttggttctgttttggagtctatatgattgtagcatggactttctgtcgtagg |
155 |
Q |
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| T |
34681782 |
agttttgtttttggatctgcgctcttctgtttctgtggagcattcgtgttggttctgttttggtgtctatttgatggccgcagggactttctatcgtggg |
34681881 |
T |
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| Q |
156 |
ag |
157 |
Q |
| |
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|| |
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| T |
34681882 |
ag |
34681883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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