View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16790_low_6 (Length: 570)
Name: NF16790_low_6
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 4 - 552
Target Start/End: Complemental strand, 39584553 - 39584005
Alignment:
| Q |
4 |
ggaggagcagagacatcagctacaactctagaatgggcaatgtctgctttgctaaatcatccagaagtgttaaagaaagcaagggatgaaatagatacaa |
103 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584553 |
ggaggaacagaaacatcagctacaactctagaatgggcaatgtctgctttgctaaatcatccagaagtgttaaagaaagcaagggatgaaatagatacaa |
39584454 |
T |
|
| Q |
104 |
acataggacaagatcacttagtagaagagtcagacatttcaaaactcccctacctacaaaatataatccacgagacatttcgattgcatcctgcatttgc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584453 |
acataggacaagatcacttagtagaagagtcagacatttcaaaactcccctacctacaaaatataatccacgagacatttcgattgcatcctgcatttgc |
39584354 |
T |
|
| Q |
204 |
attgttggctcctcatttttcttcacaagattgcaccataggaggttataatgtcccaaaaaacactattttattggttaatgcttgggcaattcacaga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584353 |
attgttggctcctcatttttcttcacaagattgcaccataggaggttatattgtcccaaaaaacactattttattggttaatgcttgggcaattcacaga |
39584254 |
T |
|
| Q |
304 |
gattctcaactatggagtgacccaacacaattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaaggg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584253 |
gattctcaactatggagtgacccaacacaattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaaggg |
39584154 |
T |
|
| Q |
404 |
cttgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattacttatacaatgttttgattggaaaagaataaatgaggaagaaattga |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39584153 |
cttgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattacttatccaatgttttgattggaaaagaataagtgaggaagaaattga |
39584054 |
T |
|
| Q |
504 |
tatgactgaaggaaaaggagccactactccgaagttaattcccttggag |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39584053 |
tatgactgaaggaaaaggagccactactccgaagctaattcccttggag |
39584005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 12151563 - 12151489
Alignment:
| Q |
340 |
ccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
414 |
Q |
| |
|
|||||||||||||| |||||||| || | ||||||| ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
12151563 |
ccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctgga |
12151489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 38974843 - 38974762
Alignment:
| Q |
334 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
415 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| || ||||||||| ||||||| || ||||||||||||||||| |||| |
|
|
| T |
38974843 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
38974762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 12151875 - 12151723
Alignment:
| Q |
28 |
actctagaatgggcaatgtctgctttgctaaatcatccagaagtgttaaagaaagcaagggatgaaatagatacaaacataggacaagatcacttagtag |
127 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | ||||| | ||||| ||||||| ||||||| || | || || ||||| | |||| || |||| |
|
|
| T |
12151875 |
actctagagtgggcaatgtctgctttattaaataacccagagatattaaaaaaagcaaaggatgaattatacaccaaaataggcaatgatcgtttggtag |
12151776 |
T |
|
| Q |
128 |
aagagtcagacatttcaaaactcccctacctacaaaatataatccacgagaca |
180 |
Q |
| |
|
| ||||||||||||||||| || || ||| | ||||| || ||| |||||||| |
|
|
| T |
12151775 |
atgagtcagacatttcaaatcttccatacattcaaaacattatctacgagaca |
12151723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 548
Target Start/End: Complemental strand, 39572713 - 39572633
Alignment:
| Q |
466 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattccctt |
548 |
Q |
| |
|
||||| |||||||||| ||||| |||| ||||||||| |||| | |||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattg--atgagttaaggaaaaggagtcactactccaaagccaattccctt |
39572633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 38931689 - 38931612
Alignment:
| Q |
337 |
aagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
414 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| | ||||| ||| ||||||| || ||||| |||| ||| |||||| |
|
|
| T |
38931689 |
aagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctgga |
38931612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University