View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16790_low_7 (Length: 501)
Name: NF16790_low_7
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_7 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 480
Target Start/End: Original strand, 6555367 - 6555833
Alignment:
| Q |
14 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555367 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
6555466 |
T |
|
| Q |
114 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555467 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
6555566 |
T |
|
| Q |
214 |
caatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555567 |
caatggcggacgagaagaaatggctgaaagtaacctgttggttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaa |
6555666 |
T |
|
| Q |
314 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555667 |
ggtagtagatttccaaattggctaaggggttgtcatttacccaacttagtatctcttgaacttaagggttgtaagttatgttcctgtttgccaacacttg |
6555766 |
T |
|
| Q |
414 |
gacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555767 |
gacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
6555833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Original strand, 6527801 - 6528276
Alignment:
| Q |
14 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527801 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
6527900 |
T |
|
| Q |
114 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6527901 |
ttcatggaacaattcatattaaaggcttgggtaatgtcagtgatactgcagatgctgccccattaaatttgaaagatatagaagaattgcatactgagtt |
6528000 |
T |
|
| Q |
214 |
caatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaa |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6528001 |
caatggcggaagagaagaaatggctgaaagcaacctgttagtcttggaggctatacaaccaaatagcaacttgaagaagctcaacatcacacactacaaa |
6528100 |
T |
|
| Q |
314 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||| ||||||||||||||||||| | |||| |
|
|
| T |
6528101 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttcaactgaatggttgtgggttatgttcctgtttgccaccccttg |
6528200 |
T |
|
| Q |
414 |
gacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagattttgatga |
489 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6528201 |
gacaactcccttctcttaagaaactttccgtttatgattgtgaaggaataaagatcattgatgaagatttttatga |
6528276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 6521061 - 6521525
Alignment:
| Q |
14 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521061 |
aagaatatgggaaagctaagtaatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
6521160 |
T |
|
| Q |
114 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6521161 |
ttcatggaacaattcatattaaagggttgggtaatgttagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatacagagtt |
6521260 |
T |
|
| Q |
214 |
caatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaa |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| ||||||||| || || |||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
6521261 |
caatggcggaagagaagaaatggctgaaagcaacctgttagtcttggaggctatacaatcaaatagcaacttgaagaagctcaacatcacacgctacaaa |
6521360 |
T |
|
| Q |
314 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttg |
413 |
Q |
| |
|
|||||||||||||||||||||| | | | |||||||||||||||||||||||||| || | |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6521361 |
ggtagtagatttccaaattggc---gtgattgtcatttacccaacttagtatctcttcaactgaaggattgta---gatgttcctgtttgccaacacttg |
6521454 |
T |
|
| Q |
414 |
gacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagatttt |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521455 |
gacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagatttt |
6521525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 6735065 - 6734597
Alignment:
| Q |
18 |
atatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
117 |
Q |
| |
|
|||||||||||||||| |||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6735065 |
atatgggaaagctaaacaatcttcaaagcctatcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccagcttca |
6734966 |
T |
|
| Q |
118 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatact |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
6734965 |
tggaacaattcatattaaagggctgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaattacaaatg |
6734866 |
T |
|
| Q |
209 |
gagttcaatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacact |
308 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6734865 |
gagttcaatggcggaagagaagaaatggatgaaagaagtgtgttagtcttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacact |
6734766 |
T |
|
| Q |
309 |
acaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||| ||||||||||||||||| |
|
|
| T |
6734765 |
acaaaggtagtagatttccaaattggctaaggggtagtcatttacgcaacttagtatctcttgaactgaatggttgta---gatgttcctgtttgccaat |
6734669 |
T |
|
| Q |
409 |
acttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734668 |
acttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
6734597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 22 - 480
Target Start/End: Complemental strand, 8453761 - 8453282
Alignment:
| Q |
22 |
gggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatgga |
121 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8453761 |
gggaaagctaaacaatcttcaaagcttgtcatattttattgtggaagagcagaatgtatctgatcttaaagagttggcaaaactaaaccatcttcatgga |
8453662 |
T |
|
| Q |
122 |
acaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatactgagt |
212 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||| ||||||| |||| || ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
8453661 |
gcaattgatattgaagggttgggtaatgttagcgatcttgcagattctgctactgtaaatttgaaagatacgaaatatttagaagaattacatatgaagt |
8453562 |
T |
|
| Q |
213 |
tcaatggcggacgagaaga------------aatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacat |
300 |
Q |
| |
|
| |||||||| ||||||| |||||||||||| || ||| ||| ||||||||||| |||||||||| |||||||||| ||| | ||| |
|
|
| T |
8453561 |
ttgatggcggaagagaagaaatggatgagtcaatggctgaaagcaatgtgtcagtcttggaggctctccaaccaaatagaaacttgaagaggcttaccat |
8453462 |
T |
|
| Q |
301 |
tacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaattta-agggttgtaagttatgttcctg |
399 |
Q |
| |
|
|| | |||||||||| ||| |||||||||||| |||||||| ||||||||| ||||||||||||||| ||| || || |||| |||||||| | |
|
|
| T |
8453461 |
ctcaaaatacaaaggtaatagctttccaaattggataaggggttatcatttaccaaacttagtatctctt-aatctacagttttgtggattatgttcttt |
8453363 |
T |
|
| Q |
400 |
tttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
480 |
Q |
| |
|
|||||| ||||||| |||||| | |||||||| ||||| |||| |||||||| |||||||||||||| | |||||| |
|
|
| T |
8453362 |
gttgccaccacttgggacactcccctttctcaagatgctttctatttcagactgtgatggaataaagatcataggtgaaga |
8453282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 6946401 - 6946248
Alignment:
| Q |
18 |
atatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
117 |
Q |
| |
|
|||| ||||| ||||| ||||||||| |||| | |||||||||||||||| || ||||| |||||||| || || |||| ||||| ||||||||||| |
|
|
| T |
6946401 |
atataggaaatctaaacaatcttcaggccttaccttattttattgtggaagagcagaatgagtctgatcttaaggagttggggaaactaaaccatcttca |
6946302 |
T |
|
| Q |
118 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgc |
171 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
6946301 |
tggaacaattgatattaaagggttgggtaatgtgattgatcctgcagatgctgc |
6946248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 6840067 - 6840177
Alignment:
| Q |
260 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
359 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||| ||| ||||||| ||||||||||| | |||||||| |||||| |
|
|
| T |
6840067 |
gaggctcttcaaccaaatagcaacttggagaagctcaacataaaacactacaaaggtaatagctttccaagttggctaagggcttgtcatttatccaact |
6840166 |
T |
|
| Q |
360 |
tagtatctctt |
370 |
Q |
| |
|
||||||||||| |
|
|
| T |
6840167 |
tagtatctctt |
6840177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 6946138 - 6946028
Alignment:
| Q |
260 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
359 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||| ||| ||||||| || ||||| ||||||||||||||||| ||| ||||||| | |||| |
|
|
| T |
6946138 |
gaggctcttcaaccaaagagcaacttgaagaagctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaact |
6946039 |
T |
|
| Q |
360 |
tagtatctctt |
370 |
Q |
| |
|
||||||||||| |
|
|
| T |
6946038 |
tagtatctctt |
6946028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 257 - 370
Target Start/End: Original strand, 8570114 - 8570227
Alignment:
| Q |
257 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
356 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||| ||| ||| ||||||| || ||||| |||||||||||| ||| |||| || |||||||| |
|
|
| T |
8570114 |
ttggatgctcttcaaccaaatagcaacttgaagaggctcaccatcacatactacaatggcagtagctttccaaattggttaatgggttttcttttaccca |
8570213 |
T |
|
| Q |
357 |
acttagtatctctt |
370 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8570214 |
acttagtatctctt |
8570227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 373
Target Start/End: Original strand, 6729885 - 6730001
Alignment:
| Q |
257 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
356 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || | || ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6729885 |
ttggaggctctacaaccaaatagaaacttgaagtgacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6729984 |
T |
|
| Q |
357 |
acttagtatctcttgaa |
373 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6729985 |
acttagtatctcttgaa |
6730001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 6450008 - 6450073
Alignment:
| Q |
308 |
tacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaa |
373 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6450008 |
tacaaaggtaatagctttccaaattggctgaggggttgtcatttacccaacttagtatctcttgaa |
6450073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 370
Target Start/End: Original strand, 6481145 - 6481258
Alignment:
| Q |
257 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
356 |
Q |
| |
|
||||||||||| |||||||||| | ||| |||| ||| | ||| |||| || | ||||| |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6481145 |
ttggaggctcttcaaccaaatagaagcttaaagaggcttagcatctcacaatatagaggtaatagatttccaaattggataaggggttgtcatttaccca |
6481244 |
T |
|
| Q |
357 |
acttagtatctctt |
370 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6481245 |
acttagtatctctt |
6481258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 480
Target Start/End: Complemental strand, 8470427 - 8470207
Alignment:
| Q |
260 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
359 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | ||| |||| |||| |||||||||| || |||||||| ||| |||||||| |||||||||| |||| |
|
|
| T |
8470427 |
gaggctcttcaaccaaataacaacttgaataggctttacatctcacaatacaaaggtaaaagctttccaaagtggataaggggttgtcatttaccaaact |
8470328 |
T |
|
| Q |
360 |
tagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtgaagg |
459 |
Q |
| |
|
||||||||||| |||| || | ||| | |||| | ||||||| |||||||||| ||||| | ||||||| | ||| | || | ||||||| | || |
|
|
| T |
8470327 |
tagtatctcttaaattacagagctgtggatcatgtctccatttgccaccacttggacagctcccgtgtctcaaggagcttgctatctgtgactgtcatgg |
8470228 |
T |
|
| Q |
460 |
aataaagatcattgatgaaga |
480 |
Q |
| |
|
||||||||| |||| |||||| |
|
|
| T |
8470227 |
aataaagataattggtgaaga |
8470207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 7586738 - 7586635
Alignment:
| Q |
260 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
359 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||| | ||| ||||||||||||||| ||| ||| |||||||| | |||||| || |||||||||||| |
|
|
| T |
7586738 |
gaggctcttcaaccaaatagcagcttgaagaggcttatcatctcacactacaaaggtaataggtttgcaaattggatgaggggttgtgatttacccaact |
7586639 |
T |
|
| Q |
360 |
tagt |
363 |
Q |
| |
|
|||| |
|
|
| T |
7586638 |
tagt |
7586635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 473
Target Start/End: Original strand, 13271758 - 13271925
Alignment:
| Q |
306 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgcc |
405 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||| ||||||| ||||||||||||||||| ||| ||||| | |||||| ||||| |
|
|
| T |
13271758 |
actacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctcttgaattgttgggatgtaaactctgttcccagttgcc |
13271857 |
T |
|
| Q |
406 |
aacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattg |
473 |
Q |
| |
|
| ||||||| || | ||||||||| |||| |||||||||| || |||| | |||||| ||||||||| |
|
|
| T |
13271858 |
accacttgggcagttgccttctctcgagaagctttccatttctggctgtcatggaatagagatcattg |
13271925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 6486191 - 6486270
Alignment:
| Q |
260 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaag |
339 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| | || ||||||||||| | | ||||||| ||||||||| |
|
|
| T |
6486191 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaag |
6486270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 6932419 - 6932336
Alignment:
| Q |
260 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggt |
343 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| | || ||||||||||| | | ||||||| |||||||| |||| |
|
|
| T |
6932419 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaaagggt |
6932336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 444
Target Start/End: Complemental strand, 6236549 - 6236411
Alignment:
| Q |
306 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgcc |
405 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| ||| | |||| ||||||| ||||||||||||||||| ||| ||||| | |||||| ||||| |
|
|
| T |
6236549 |
actacagaggtagtagctttcctaattggcttggggatcatcatctacccaatttagtatctcttgaattgttgggatgtaaatattgttcccagttgcc |
6236450 |
T |
|
| Q |
406 |
aacacttggacaactcccttctctcaagaaactttccat |
444 |
Q |
| |
|
| ||||||| || |||||||||||||||| |||||||| |
|
|
| T |
6236449 |
accacttgggcagttcccttctctcaagaagctttccat |
6236411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 6480885 - 6480994
Alignment:
| Q |
18 |
atatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
117 |
Q |
| |
|
|||| ||||||||||| | |||||| || || | |||||| ||||||||| | |||| ||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
6480885 |
atataggaaagctaaacagtcttcaaacactgccttattttgttgtggaagagaaaaatggatctgatctcaaagagttggaaaaactaaaccatcttca |
6480984 |
T |
|
| Q |
118 |
tggaacaatt |
127 |
Q |
| |
|
||||| |||| |
|
|
| T |
6480985 |
tggaaaaatt |
6480994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 473
Target Start/End: Complemental strand, 6141159 - 6140943
Alignment:
| Q |
257 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
356 |
Q |
| |
|
||||||||||| |||||||||| ||| | | || ||||| ||| | |||||| ||||||||| ||||| |||||||| ||| | |||| |||||| |
|
|
| T |
6141159 |
ttggaggctcttcaaccaaatagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatctaccca |
6141060 |
T |
|
| Q |
357 |
acttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtga |
456 |
Q |
| |
|
| ||||||||||||||||| ||| |||| |||||| |||||| ||||||| || |||||||||||||||| |||||||||| | |||| | |
|
|
| T |
6141059 |
atttagtatctcttgaattgttgggatgtacacactgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtca |
6140960 |
T |
|
| Q |
457 |
aggaataaagatcattg |
473 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
6140959 |
tggaatagagatcattg |
6140943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 8588778 - 8588694
Alignment:
| Q |
107 |
aaccatcttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
191 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
8588778 |
aaccatcttcatgggaaaattcatataaaaggtttgggtaatgtaattgatcctgcagatgctgtgacagccaatttgaaagata |
8588694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 473
Target Start/End: Complemental strand, 6258026 - 6257859
Alignment:
| Q |
306 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgcc |
405 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | | || |||| || ||||||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
6258026 |
actacagaggtagtagctttccaaattggcttggggatcttaatctaccaaatttagtatctcttgaattagtgggatgtaaacattgttcccagttgcc |
6257927 |
T |
|
| Q |
406 |
aacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattg |
473 |
Q |
| |
|
| ||||||| | |||||||||||||||| |||||||||| | |||| | |||||||||||||||| |
|
|
| T |
6257926 |
accacttgggaagttcccttctctcaagaagctttccatttcaggctgtcatggaataaagatcattg |
6257859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 6167715 - 6167646
Alignment:
| Q |
306 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatt |
375 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||| ||||||| ||||||||||||||||| |
|
|
| T |
6167715 |
actacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctcttgaatt |
6167646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 6898912 - 6898843
Alignment:
| Q |
306 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatt |
375 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
6898912 |
actacagaggcagtagatttccaaattggcttggggttcatcatttacccaatttagtatctctagaatt |
6898843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 473
Target Start/End: Original strand, 6723323 - 6723451
Alignment:
| Q |
345 |
gtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccat |
444 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||| || |||||| || ||| ||||||| || |||| | |||| |||| |||||||| |
|
|
| T |
6723323 |
gtcatttacccaatttagtatctcttgaattgttgggatgtaaattctgttcccagttaccaccacttgggcagttcccctttctcgagaagctttccat |
6723422 |
T |
|
| Q |
445 |
ttatgactgtgaaggaataaagatcattg |
473 |
Q |
| |
|
|| | |||||| |||||| ||| ||||| |
|
|
| T |
6723423 |
ttcaggctgtgatggaatagagaccattg |
6723451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 480
Target Start/End: Original strand, 8406 - 8881
Alignment:
| Q |
14 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406 |
aagaatatgggaaagctaaataatcttcagaccatgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
8505 |
T |
|
| Q |
114 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| || |
|
|
| T |
8506 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaatttca |
8605 |
T |
|
| Q |
205 |
tactgagttcaatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattaca |
304 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8606 |
aatggagttcaatggcggaagagaagaaatggatgaaagaagtgtgttagtcttggaggctttacaaccaaatagcaacttgaagaagctcaacatcaca |
8705 |
T |
|
| Q |
305 |
cactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttgaatttaagggttgtaagttatgttcctgtttgc |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
8706 |
tgctacaaaggtagtagctttccaaattggctaaggggtagtcatttaccgaacttagtatctcttcaactgaagggttgtgggttatgttcctgtttgc |
8805 |
T |
|
| Q |
405 |
caacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
480 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8806 |
cagcacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaaga |
8881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 2623664 - 2623847
Alignment:
| Q |
7 |
gatgtcgaagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactc |
106 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||| | | ||| ||||||||||| ||||| ||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
2623664 |
gatgtcaaagcatatgggaaagctaaacaatcttcaaagcatgttatattttattggggaagagcataatggatctgatcttaaagagttggcaaaacaa |
2623763 |
T |
|
| Q |
107 |
aaccatcttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
191 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||| ||||||||| ||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
2623764 |
aaccat-ttcatggaacaattcatattgaaggcttggataatgtcagcgatcttgcagatgctgctacagtaaatttgaaagata |
2623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 480
Target Start/End: Complemental strand, 1043 - 820
Alignment:
| Q |
257 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
356 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||| ||||| ||| | |||||| || || | |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
1043 |
ttggatgctcttcaaccaaataacaacttgaagaggctcactattgaaggctacaatggcagcaactttccaaattggataacaggttgtcatttaccca |
944 |
T |
|
| Q |
357 |
acttagtatctcttgaatttaagggttgtaagttatgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtga |
456 |
Q |
| |
|
|||||||||||||| || | | ||| ||||||||| ||| ||| ||||||| || || |||||||||||||| ||||| |||| | ||||| |
|
|
| T |
943 |
acttagtatctcttcaactgttaagctgtggattatgttcccattttccaccacttgggcagcttccttctctcaagaatctttctatttcatattgtga |
844 |
T |
|
| Q |
457 |
aggaataaagatcattgatgaaga |
480 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
843 |
tggaataaagatcattggtgaaga |
820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 6574499 - 6574598
Alignment:
| Q |
271 |
accaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
370 |
Q |
| |
|
||||||||||||| | ||| ||||| ||| | | ||||||| || || || |||||||||||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
6574499 |
accaaatagcaacctacagaggctcaccatcaaatactacaatggcagcagctttccaaattggctaaggtgttctcatttacctaacttagtatctctt |
6574598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 35141574 - 35141634
Alignment:
| Q |
306 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatc |
366 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||||||||||| |||||||| |
|
|
| T |
35141574 |
actacagaggtagtagctttccaaattggcttggggatcatcatttacccaatttagtatc |
35141634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University