View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16790_low_8 (Length: 467)

Name: NF16790_low_8
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16790_low_8
NF16790_low_8
[»] chr1 (13 HSPs)
chr1 (162-451)||(13061940-13062230)
chr1 (11-160)||(13061751-13061900)
chr1 (225-394)||(41035067-41035233)
chr1 (203-330)||(17114734-17114861)
chr1 (203-332)||(50903502-50903631)
chr1 (212-332)||(19394156-19394276)
chr1 (211-332)||(49491908-49492028)
chr1 (203-303)||(3374303-3374403)
chr1 (395-451)||(39332185-39332241)
chr1 (18-148)||(44163556-44163688)
chr1 (212-261)||(39332376-39332425)
chr1 (194-286)||(14344072-14344164)
chr1 (336-439)||(17114906-17115000)
[»] chr3 (14 HSPs)
chr3 (163-451)||(29346648-29346939)
chr3 (218-449)||(35526596-35526830)
chr3 (11-163)||(29346977-29347129)
chr3 (200-332)||(51524838-51524970)
chr3 (12-158)||(35526351-35526497)
chr3 (203-332)||(16893048-16893177)
chr3 (213-332)||(31067146-31067266)
chr3 (200-328)||(26796837-26796965)
chr3 (393-447)||(21845205-21845258)
chr3 (18-65)||(49106832-49106879)
chr3 (393-439)||(51524716-51524762)
chr3 (409-441)||(3395823-3395855)
chr3 (351-394)||(31067045-31067088)
chr3 (221-263)||(8357503-8357545)
[»] chr7 (8 HSPs)
chr7 (11-444)||(19407683-19408113)
chr7 (11-169)||(7543895-7544053)
chr7 (195-319)||(26449548-26449672)
chr7 (212-317)||(33191264-33191369)
chr7 (393-440)||(33191145-33191192)
chr7 (25-135)||(29132251-29132362)
chr7 (402-439)||(26449738-26449775)
chr7 (25-65)||(16099839-16099879)
[»] chr2 (10 HSPs)
chr2 (194-439)||(37344483-37344728)
chr2 (175-442)||(31092178-31092445)
chr2 (191-332)||(18811713-18811854)
chr2 (194-332)||(14296269-14296407)
chr2 (210-332)||(13502653-13502775)
chr2 (210-301)||(8413844-8413935)
chr2 (194-320)||(18693087-18693210)
chr2 (18-65)||(37344844-37344891)
chr2 (16-70)||(31092561-31092615)
chr2 (393-438)||(18811927-18811971)
[»] chr8 (15 HSPs)
chr8 (175-451)||(29368954-29369232)
chr8 (211-332)||(8831250-8831371)
chr8 (200-336)||(36206437-36206573)
chr8 (194-332)||(27786798-27786936)
chr8 (11-158)||(3801149-3801296)
chr8 (336-451)||(8831414-8831520)
chr8 (337-439)||(36206598-36206691)
chr8 (11-70)||(29369348-29369407)
chr8 (210-332)||(28225740-28225862)
chr8 (393-439)||(27787012-27787058)
chr8 (393-446)||(399960-400012)
chr8 (393-451)||(28225956-28226014)
chr8 (271-320)||(399808-399857)
chr8 (353-394)||(399929-399970)
chr8 (357-394)||(27786985-27787022)
[»] chr4 (11 HSPs)
chr4 (202-441)||(37049871-37050102)
chr4 (211-332)||(19852455-19852576)
chr4 (211-332)||(16593797-16593918)
chr4 (210-332)||(24239870-24239989)
chr4 (11-70)||(7492271-7492330)
chr4 (18-148)||(37050195-37050326)
chr4 (351-451)||(19852306-19852397)
chr4 (11-70)||(7500322-7500381)
chr4 (351-441)||(16593976-16594057)
chr4 (210-332)||(16832167-16832289)
chr4 (344-394)||(16832337-16832387)
[»] chr6 (10 HSPs)
chr6 (191-441)||(25167714-25167955)
chr6 (210-323)||(10990004-10990117)
chr6 (191-313)||(3949324-3949446)
chr6 (11-94)||(3949584-3949667)
chr6 (212-318)||(4263398-4263501)
chr6 (393-439)||(29708949-29708995)
chr6 (25-94)||(5605472-5605541)
chr6 (339-439)||(10989861-10989952)
chr6 (336-382)||(29709111-29709157)
chr6 (164-255)||(13535133-13535225)
[»] chr5 (13 HSPs)
chr5 (191-441)||(19215245-19215494)
chr5 (174-417)||(788265-788509)
chr5 (11-163)||(19215560-19215712)
chr5 (18-148)||(32278505-32278637)
chr5 (194-332)||(36868263-36868401)
chr5 (279-407)||(35811028-35811154)
chr5 (191-269)||(32278714-32278792)
chr5 (19-160)||(788078-788217)
chr5 (226-332)||(15188037-15188140)
chr5 (277-329)||(37307261-37307313)
chr5 (393-436)||(15187952-15187994)
chr5 (210-256)||(36150672-36150718)
chr5 (25-94)||(36868515-36868583)
[»] scaffold0531 (1 HSPs)
scaffold0531 (210-332)||(10230-10352)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 162 - 451
Target Start/End: Original strand, 13061940 - 13062230
Alignment:
Q  162 ccatctatacttttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaag 260  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13061940 ccatctatacttttgcaattggaccaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaag 13062039  T
Q  261 ctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcat 360  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13062040 ctaaaaggcatcactttgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagtctcttgtcat 13062139  T
Q  361 ggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggttgcagc 451  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13062140 ggctgagagtgtcctccatcacatcttctactttttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggctgcagc 13062230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 13061751 - 13061900
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||  ||||||| ||    
T  13061751 cagagatacatagagtaaaacctatgaaaagagaaaccgagtctatcccaagaaatgaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacag 13061850  T
Q  111 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagact 160  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13061851 aaaactagtcaaactacgaccattctaggccaaacaacagctaaaagact 13061900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 225 - 394
Target Start/End: Original strand, 41035067 - 41035233
Alignment:
Q  225 ttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtcttagtgctctcagata 324  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||   | |||||||||||||||||||||||||||| |||| ||||||||||||    
T  41035067 ttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttctctgccttattgctctcagata 41035166  T
Q  325 gacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttc 394  Q
    |||||||| ||| ||   |   ||| || | ||||||||||||||||||||||| |||||||||||||||    
T  41035167 gacttggatagtgtt--gttcaaagtct-tcgtcatggctgagagtgtcctccaacacctcttctacttc 41035233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 17114734 - 17114861
Alignment:
Q  203 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 302  Q
    |||||| ||||||||||||| ||||||| || |||||||||||  ||| ||||||||||||  |||| ||||| ||||||| || |||||||||||| ||    
T  17114734 caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttctttctc 17114833  T
Q  303 tctgtcttagtgctctcagatagacttg 330  Q
    ||||||||||||||||||||||||||||    
T  17114834 tctgtcttagtgctctcagatagacttg 17114861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 50903502 - 50903631
Alignment:
Q  203 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 302  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||||||||| ||||  |    
T  50903502 caagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttcac 50903601  T
Q  303 tctgtcttagtgctctcagatagacttgga 332  Q
    |||| |||||||||||| || |||||||||    
T  50903602 tctgccttagtgctctctgacagacttgga 50903631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 19394156 - 19394276
Alignment:
Q  212 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctta 311  Q
    |||| |||||| |||||||||||||||||||||| | ||| ||||||||| | ||||| ||||| || |||| ||||||||||||||||||||||  |||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgcttta 19394255  T
Q  312 gtgctctcagatagacttgga 332  Q
    |||||||| ||||| ||||||    
T  19394256 gtgctctccgataggcttgga 19394276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 49491908 - 49492028
Alignment:
Q  211 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctt 310  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||| ||||| ||||||| |||||||||| |||| || ||| |||    
T  49491908 ctttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttgttcacatgcttcttctgctttctccctgcctt 49492006  T
Q  311 agtgctctcagatagacttgga 332  Q
    |||||||||  | |||||||||    
T  49492007 agtgctctctaacagacttgga 49492028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 3374403 - 3374303
Alignment:
Q  203 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 302  Q
    |||||| ||||||||| ||| |||||||||||  ||||||||| ||||||||||||| |||   ||| ||||| ||||||| ||||||||||||||||||    
T  3374403 caaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttcacttgcttcttcttctttttc 3374304  T
Q  303 t 303  Q
    |    
T  3374303 t 3374303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 39332241 - 39332185
Alignment:
Q  395 ttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggttgcagc 451  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||    
T  39332241 ttctacctcatccccacaaaatttggaaagaatctgcacactctttaaggctgcagc 39332185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 44163556 - 44163688
Alignment:
Q  18 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaata-gaaaact 116  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| | || | ||| | ||| || |||||||| |||| ||  ||| |  ||||||    
T  44163556 acatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaggtaatgccctgaggaacgatgtgtcaaagacagtcaaagaacataaaaact 44163655  T
Q  117 agtc-aaactatgaccattctaggccaaacaac 148  Q
    |||| ||| |||||||||||| |||||||||||    
T  44163656 agtctaaagtatgaccattcttggccaaacaac 44163688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 39332425 - 39332376
Alignment:
Q  212 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagc 261  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  39332425 tttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagc 39332376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 14344164 - 14344072
Alignment:
Q  194 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctg 286  Q
    ||||| ||||||| || |||||||||||| ||||||| |||| ||| ||||| ||  ||||||||| ||| ||||| ||||| ||||||||||    
T  14344164 tgtatctgtcaagtcgactttggaggtacccttttggacacgagtcatcattccgattgagttaaaactagaaggcttcactttgttcacctg 14344072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 17114906 - 17115000
Alignment:
Q  336 tcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacac 435  Q
    ||||||| |||||| |||||||| |||| |||||||| |  ||||||||||||||||         |||||| | ||||||||||||||||||| |||||    
T  17114906 tcttccacctcaagtctcttgtcgtggccgagagtgtaccacatcacctcttctact---------tcatcccctcaaaatttggaaagaatctacacac 17114996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 163 - 451
Target Start/End: Complemental strand, 29346939 - 29346648
Alignment:
Q  163 catctatacttttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagc 261  Q
    |||||||||| |||||| |||||||| | || ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  29346939 catctatactcttgcaattggaccaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagc 29346840  T
Q  262 taaaaggcatcactctgttcacctgcttcttcttctt------tttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctctt 355  Q
    || ||||||||||  ||||||||||||||||||||||      |||||||||||||||||||||| ||||||||||||||||||||||||||||||        
T  29346839 tataaggcatcacgttgttcacctgcttcttcttcttcttctttttctctgtcttagtgctctcaaatagacttggaaagtcttccatctcaagcc---- 29346744  T
Q  356 gtcatggctgagagtgtcctccatcacctcttctacttcttctacctcat-cctcccaaaatttggaaagaatctgcacactctttaaggttgcagc 451  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||    
T  29346743 -tcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcccccccaaaaattggaaagaatctgcacactctttaaggctgcagc 29346648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 218 - 449
Target Start/End: Original strand, 35526596 - 35526830
Alignment:
Q  218 ggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctta----gt 313  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||  ||| |||||||    ||    
T  35526596 ggtacccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactctttgtcttaattagt 35526695  T
Q  314 gctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaa 413  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  35526696 gctctcagatagacttggatagtcttccatctcaagcctcttgtcatggctgacagtgtcctccatcacctcttctacttcttctacctcatcc-cccaa 35526794  T
Q  414 aatttggaaagaatctgcacactctttaaggttgca 449  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  35526795 aatttagaaagaatctgcacactctttaaggctgca 35526830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 29347129 - 29346977
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| |     
T  29347129 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacat 29347030  T
Q  111 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgcc 163  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  29347029 aaaactagtcaaactatgaccattccaggccaaacaacaactaaaagactgcc 29346977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 51524970 - 51524838
Alignment:
Q  200 tgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 299  Q
    ||||||||  ||||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | |||||||||||||||||||    
T  51524970 tgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttcttt 51524871  T
Q  300 ttctctgtcttagtgctctcagatagacttgga 332  Q
     |||| | |||| ||||||||||||||||||||    
T  51524870 ctctcagccttattgctctcagatagacttgga 51524838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 35526351 - 35526497
Alignment:
Q  12 agagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaataga 111  Q
    |||||||||||||||||||| |||||||||||||||| |  |||| |||||||| |||| |||||||||||| |||||||||| |||  ||||| | | |    
T  35526351 agagatacatagagtaaaacttatgaaaagagaaaccagagctattccaagaaaggaaatggcctaatgaaacaggtgtcaaaaacaaccattgtacata 35526450  T
Q  112 aaactagtcaaactatgaccattctaggccaaacaacagctacaaga 158  Q
    |||||||||||| |||||||||  | |||| ||||| ||||| ||||    
T  35526451 aaactagtcaaattatgaccatgtttggcccaacaatagctaaaaga 35526497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 16893177 - 16893048
Alignment:
Q  203 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 302  Q
    |||||| |||||||||| || |||||| ||||||||||||||| |||||||||| || |||  |||| ||||| |||||||||||||||| | ||||||     
T  16893177 caaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgcttttta 16893078  T
Q  303 tctgtcttagtgctctcagatagacttgga 332  Q
    |||| |||||||||||| || |||||||||    
T  16893077 tctgccttagtgctctctgacagacttgga 16893048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 332
Target Start/End: Complemental strand, 31067266 - 31067146
Alignment:
Q  213 ttggaggtactcttttgggcacgggtcctcatttcgg-ctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctta 311  Q
    |||||| ||| ||||| |||||||||||||||| | | ||||||||||||||  | || ||||| ||| ||| |||||||||||||||||||||| ||||    
T  31067266 ttggagttacacttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgcctta 31067167  T
Q  312 gtgctctcagatagacttgga 332  Q
    |||||||| ||||||||||||    
T  31067166 gtgctctccgatagacttgga 31067146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 26796837 - 26796965
Alignment:
Q  200 tgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 299  Q
    |||||||||  |||| |||| ||  ||||||| | || ||||||||||| |||||||||||||   || | ||||| |||| || |||||||||||||||    
T  26796837 tgtcaaggcaactttagaggcaccattttgggtatggttcctcatttcgactgagttaaagctggtagacttcactttgttaacatgcttcttcttcttt 26796936  T
Q  300 ttctctgtcttagtgctctcagatagact 328  Q
     |||||| |||||||||||||||||||||    
T  26796937 ctctctgccttagtgctctcagatagact 26796965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 21845205 - 21845258
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggttg 447  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  21845205 tcttctacctcatcc-cccaaaatttggaaagaatctgcacactctttagggttg 21845258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 49106832 - 49106879
Alignment:
Q  18 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 65  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||||    
T  49106832 acatagtgaaaaacctatgaaaagagaaaccggatctatcccaagaaa 49106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 51524762 - 51524716
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactctt 439  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||    
T  51524762 tcttctacttcatccccccaaaatttggaaagaatttgcacactctt 51524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 3395823 - 3395855
Alignment:
Q  409 cccaaaatttggaaagaatctgcacactcttta 441  Q
    |||||||||||||||||||||||||||||||||    
T  3395823 cccaaaatttggaaagaatctgcacactcttta 3395855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 31067088 - 31067045
Alignment:
Q  351 ctcttgtcatggctgagagtgtcctccatcacctcttctacttc 394  Q
    ||||||||| || ||| |||||||||||||||||||||||||||    
T  31067088 ctcttgtcagggttgatagtgtcctccatcacctcttctacttc 31067045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 8357503 - 8357545
Alignment:
Q  221 actcttttgggcacgggtcctcatttcggctgagttaaagcta 263  Q
    |||||||||| |||| |||||||||| ||||||||||||||||    
T  8357503 actcttttggacacgagtcctcattttggctgagttaaagcta 8357545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 19407683 - 19408113
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 110  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| || ||| |||||| ||| |||||| |||||||||| |||  ||||||| ||    
T  19407683 cagagatacatagtgtaaaacctatgaaaagagaaaccgggtttatccgaaaaaaggaaaggccctgatgaaacaggtgtcaaagacaaccattgaacag 19407782  T
Q  111 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgccatctatacttttgcaactggaccaatttt-ctgtatttgtcaaggcg 209  Q
    ||||||||| | | || ||||||||| |||||||||||||||| ||||||              ||||| |||| ||| | | |||||| ||  | ||||    
T  19407783 aaaactagttagatta-gaccattcttggccaaacaacagctaaaagactaa------------tgcaattggaacaactatactgtatctgctagggcg 19407869  T
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc---------ttcttctttt 300  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||         |||||||||     
T  19407870 gctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttcttcttcttcttta 19407969  T
Q  301 tctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctac 400  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| | ||||||||| ||||||| ||||||||| |||||    
T  19407970 tctctgttttagtgctctcagataggcttggatagtcttccatctcaagccttttgtcatggctaatagtgtcctcaatcacctattctacttcatctac 19408069  T
Q  401 ctcatcctcccaaaatttggaaagaatctgcacactctttaagg 444  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||    
T  19408070 ctcatccccccaaaatttggaaagaatctgcgcactttttaagg 19408113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 7543895 - 7544053
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||    
T  7543895 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgtaagaggtgtcaaatacagccactgaacag 7543994  T
Q  111 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgccatctat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7543995 aaaactagtcaaactatgaccattctaggccaaacaacagctaaaagactgccctctat 7544053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 26449548 - 26449672
Alignment:
Q  195 gtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttct 294  Q
    |||| |||| |||| | ||||||||||| ||||||| |||| ||||||||| |||||||| | ||||||  |||| ||||||||||||||||||||||||    
T  26449548 gtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctgttcacctgcttcttct 26449647  T
Q  295 tctttttctctgtcttagtgctctc 319  Q
     |||| |||||| ||||||||||||    
T  26449648 gctttctctctgccttagtgctctc 26449672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 33191369 - 33191264
Alignment:
Q  212 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctta 311  Q
    |||| |||||| ||| ||||||||||||||||| || |||||||||||||||  |||| ||||| || |||| || ||||||||| |||||||||  |||    
T  33191369 tttgaaggtacccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgcttta 33191270  T
Q  312 gtgctc 317  Q
    ||||||    
T  33191269 gtgctc 33191264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 440
Target Start/End: Complemental strand, 33191192 - 33191145
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactcttt 440  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  33191192 tcttctacctcatccccccaaaatttgaaaagaatctgcacactcttt 33191145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 29132251 - 29132362
Alignment:
Q  25 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaata-gaaaactagtcaaa 123  Q
    ||||||| |||||||||| ||||||  |||||||||||||| |||| |  ||||  |||||||||||||| ||   ||||| | |  |||||||||||||    
T  29132251 gtaaaacttatgaaaagaaaaaccgaatctatcccaagaaaggaaaagttctaaaaaaagaggtgtcaaagacgaccattgtacataaaaactagtcaaa 29132350  T
Q  124 ctatgaccattc 135  Q
     |||||||||||    
T  29132351 ttatgaccattc 29132362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 26449738 - 26449775
Alignment:
Q  402 tcatcctcccaaaatttggaaagaatctgcacactctt 439  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  26449738 tcatccccccaaaatttggagagaatctgcacactctt 26449775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 16099879 - 16099839
Alignment:
Q  25 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 65  Q
    |||||||||||| ||||||||||||| |||||||| |||||    
T  16099879 gtaaaacctatggaaagagaaaccggatctatcccgagaaa 16099839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 194 - 439
Target Start/End: Complemental strand, 37344728 - 37344483
Alignment:
Q  194 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 293  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||  |||||||| ||||||||||||| ||| || |  ||||| |||||||||| ||||||    
T  37344728 tgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgttcacctgtttcttc 37344629  T
Q  294 ttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctactt 393  Q
    |||||| |||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||||| || |    
T  37344628 ttctttctctctgccttagtgctttcaaatagacttggatagtcttccatctcaagcctcaggtcatggctgagagtgtccttcatcacctcttcgacct 37344529  T
Q  394 cttctacctcatcctcccaaaatttggaaagaatctgcacactctt 439  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  37344528 cttctacctcatccccccaaaatttggaaagaatctgcacactctt 37344483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 175 - 442
Target Start/End: Complemental strand, 31092445 - 31092178
Alignment:
Q  175 tgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatca 273  Q
    ||||| |||||||| | |||||||| || |||| || |||||||||||| |||||||||||| ||||||||| ||||||||||||| ||| |||||||||    
T  31092445 tgcaaatggaccaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatca 31092346  T
Q  274 ctctgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtc 373  Q
    || | ||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| | | ||||||    
T  31092345 ctttattcacgtgattcttcttctttctctctgtcttagtgctctcagatagacttggatagtcttccagctcaagcctcttgtcttggttaatagtgtc 31092246  T
Q  374 ctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacactctttaa 442  Q
     |||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||| |||||    
T  31092245 atccatcacctcttctacttcatctacttcatcc-cccaatatttggaaagaatctgcacactttttaa 31092178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 332
Target Start/End: Original strand, 18811713 - 18811854
Alignment:
Q  191 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 290  Q
    |||||||| ||||||||  ||||||||||  | |||||||||||||||||||||| ||||||||||||||||| || || ||||| | | ||||||||||    
T  18811713 ttctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgcacctgcttc 18811812  T
Q  291 ttcttctttttctctgtcttagtgctctcagatagacttgga 332  Q
    ||||||||| |||||| |||| |||||||| ||| |||||||    
T  18811813 ttcttctttctctctgccttattgctctcaaataaacttgga 18811854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 332
Target Start/End: Original strand, 14296269 - 14296407
Alignment:
Q  194 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 293  Q
    ||||| || ||||||  |||||||||||| ||||||| |||| || |||||| |||||||||||||||||  |||| ||| | |||||| ||||||||||    
T  14296269 tgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatctgcttcttc 14296368  T
Q  294 ttctttttctctgtcttagtgctctcagatagacttgga 332  Q
    |||||| |||||  |||||| ||||||||||||||||||    
T  14296369 ttctttctctctaccttagtactctcagatagacttgga 14296407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 13502775 - 13502653
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtct 309  Q
    ||||||||| |||||||||||||||||  |||||||  ||||||||||||||||  || | |  || |||||||  ||||||||||||||||||||| ||    
T  13502775 gctttggagttactcttttgggcacggaccctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttctctgcct 13502676  T
Q  310 tagtgctctcagatagacttgga 332  Q
    |||||||||| || |||||||||    
T  13502675 tagtgctctccgaaagacttgga 13502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 8413844 - 8413935
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttttt 301  Q
    ||||||||||||| |||||| ||||||||||||||| ||| |||||| ||||||  |||| ||||| ||||| |||||||||||| ||||||    
T  8413844 gctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttttt 8413935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 18693210 - 18693087
Alignment:
Q  194 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 293  Q
    ||||| ||||||| |  ||||||||| || ||||| ||||| |||||||||| ||||| |||||||||||  || | ||||| ||||  |  |   ||||    
T  18693210 tgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttgtttgcacg---cttc 18693114  T
Q  294 ttctttttctctgtcttagtgctctca 320  Q
    ||||||||||||| |||||||||||||    
T  18693113 ttctttttctctgccttagtgctctca 18693087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 37344891 - 37344844
Alignment:
Q  18 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 65  Q
    |||||| |||||||||| ||||||||||| ||| ||||||||||||||    
T  37344891 acatagtgtaaaacctacgaaaagagaaatcggatctatcccaagaaa 37344844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 31092615 - 31092561
Alignment:
Q  16 atacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 70  Q
    |||||||||||||||||||||||||||||| |  | || ||||||||||| ||||    
T  31092615 atacatagagtaaaacctatgaaaagagaatctagatcaatcccaagaaaggaaa 31092561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 18811927 - 18811971
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactct 438  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||    
T  18811927 tcttctacttcatcctcc-aaaatttggaaagaatttgcacactct 18811971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 175 - 451
Target Start/End: Complemental strand, 29369232 - 29368954
Alignment:
Q  175 tgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatca 273  Q
    ||||| |||||||| | |||||||| || |||||||| |||||| |||  ||||||||||||||||||||||  |||| ||||||||||  |||||||||    
T  29369232 tgcaattggaccaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatca 29369133  T
Q  274 ctctgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtc 373  Q
    || | ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  | | ||||||    
T  29369132 ctttattcacgtgcttcttcttctttatctttgtcttagtgctctcagatagacttggatagtcttccagctcaagcctcttgtcatgattaatagtgtc 29369033  T
Q  374 ctccatcacctcttctacttcttctacctcat-cctcccaaaatttggaaagaatctgcacactctttaaggttgcagc 451  Q
    ||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| ||||||    
T  29369032 ctctatcacctcttctacttcatctacctcatcccccccaaaatttggaaagaatctgcacactttttaaggctgcagc 29368954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 8831250 - 8831371
Alignment:
Q  211 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctt 310  Q
    |||||||| ||| |||||| ||||||||||||||| |||||||||||||||||  |||| ||||| ||||||  ||||||||||||| |||||||| |||    
T  8831250 ctttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgcctt 8831349  T
Q  311 agtgctctcagatagacttgga 332  Q
    ||||||||||||||||||||||    
T  8831350 agtgctctcagatagacttgga 8831371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 200 - 336
Target Start/End: Original strand, 36206437 - 36206573
Alignment:
Q  200 tgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 299  Q
    |||||||||  ||||||||| |||||||| |||||| ||||||||| || || ||||||||||| ||||| ||||| | ||||  |||||||||||||||    
T  36206437 tgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttcttt 36206536  T
Q  300 ttctctgtcttagtgctctcagatagacttggaaagt 336  Q
     |||||| ||| |||||||||||||||||||||||||    
T  36206537 ctctctgccttggtgctctcagatagacttggaaagt 36206573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 332
Target Start/End: Original strand, 27786798 - 27786936
Alignment:
Q  194 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 293  Q
    ||||| ||||||||  |||||||||| ||  |||||||||||| |||||||| ||||||||||||||||| ||||| ||||| | |||| |||||| |||    
T  27786798 tgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcactttattcatctgcttattc 27786897  T
Q  294 ttctttttctctgtcttagtgctctcagatagacttgga 332  Q
    |||||| |||| | |||| ||||||||||||||||||||    
T  27786898 ttctttctctccgccttattgctctcagatagacttgga 27786936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 3801296 - 3801149
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 110  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||||| |||||| | |||| ||||| ||||||||||||||| |||  | |   | |     
T  3801296 cagagatacatggaataaaacctatgaaaagagaaaccggatctatcctaagaaaggcaaggacctaaggaaagaggtgtcaaagacaaccgtattacat 3801197  T
Q  111 aaaactagtcaaactatgaccattctaggccaaacaacagctacaaga 158  Q
    |||||| |||||| |||||||||||| |||||||||||||||| ||||    
T  3801196 aaaactggtcaaattatgaccattcttggccaaacaacagctaaaaga 3801149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 451
Target Start/End: Original strand, 8831414 - 8831520
Alignment:
Q  336 tcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacac 435  Q
    ||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||    
T  8831414 tcttccacctcaattctcttgtcatggctgagagagtcctccatcacctcttctact---------tcatccccccaaaatttggaaagaatctgcacac 8831504  T
Q  436 tctttaaggttgcagc 451  Q
    |||||| || ||||||    
T  8831505 tctttagggctgcagc 8831520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 439
Target Start/End: Original strand, 36206598 - 36206691
Alignment:
Q  337 cttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacact 436  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||| |||| ||||||         |||||| ||||||||||||||||||||||||||||    
T  36206598 cttccatctcaagtctctcgtcatggctgagagtgtcctctatctcctcatctact---------tcatccccccaaaatttggaaagaatctgcacact 36206688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 29369407 - 29369348
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 70  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||    
T  29369407 cagagatacatagagtaaaacctatgaaaagagaatccggatcaatcccaagaaaggaaa 29369348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 28225740 - 28225862
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtct 309  Q
    ||||| ||||||  ||||||| |||  ||||||||| |||||||||||||| ||| |  | ||||| || |||| ||||||||||| | | |||||  ||    
T  28225740 gcttttgaggtatccttttggacacatgtcctcattccggctgagttaaagttaacaaacttcactttgatcacatgcttcttcttttctctctctacct 28225839  T
Q  310 tagtgctctcagatagacttgga 332  Q
    |||||||||||||||||||||||    
T  28225840 tagtgctctcagatagacttgga 28225862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 27787012 - 27787058
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactctt 439  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||    
T  27787012 tcttctacttcatcccctcaaaatttggaaagaatctgcacactctt 27787058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 399960 - 400012
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggtt 446  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||| ||||    
T  399960 tcttctacttcatcc-cccaaaatttggaaagaatctggacactctttagggtt 400012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 28225956 - 28226014
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggttgcagc 451  Q
    |||||||| ||||||  | |||||||||||||||||| ||||||||||| || ||||||    
T  28225956 tcttctacttcatccctctaaaatttggaaagaatctacacactctttagggctgcagc 28226014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 399808 - 399857
Alignment:
Q  271 tcactctgttcacctgcttcttcttctttttctctgtcttagtgctctca 320  Q
    ||||| ||||||| || |||||||||||| |||||| |||||||||||||    
T  399808 tcactttgttcacatgtttcttcttctttctctctgccttagtgctctca 399857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 399929 - 399970
Alignment:
Q  353 cttgtcatggctgagagtgtcctccatcacctcttctacttc 394  Q
    |||||||||||||||||||||||| ||| | |||||||||||    
T  399929 cttgtcatggctgagagtgtcctctatcgcatcttctacttc 399970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 27786985 - 27787022
Alignment:
Q  357 tcatggctgagagtgtcctccatcacctcttctacttc 394  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  27786985 tcatgactgagagtgtcctccaacacctcttctacttc 27787022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 202 - 441
Target Start/End: Complemental strand, 37050102 - 37049871
Alignment:
Q  202 tcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagcta-aaaggcatcactctgttcacctgcttcttcttctttt 300  Q
    |||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||||| ||| |||||| ||||| ||||||| || |||||||||||||    
T  37050102 tcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttt 37050003  T
Q  301 tctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctac 400  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||         ||||    
T  37050002 tctctgccttagtgctttcagatagacttggatagtcttccatctcaagcctcttgtcatggttgaaagtgtcctccatcacctctt---------ctac 37049912  T
Q  401 ctcatcctcccaaaatttggaaagaatctgcacactcttta 441  Q
    ||| ||| ||||||||||||||||||| |||||||||||||    
T  37049911 ctcttccccccaaaatttggaaagaatttgcacactcttta 37049871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 332
Target Start/End: Complemental strand, 19852576 - 19852455
Alignment:
Q  211 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctt 310  Q
    |||||||| ||||||||||||||||||| |||||| ||| ||||||||| |||  |||| ||||| ||| ||| |||||||||||||||||||||| |||    
T  19852576 ctttggagttactcttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgcctt 19852477  T
Q  311 agtgctctcagatagacttgga 332  Q
    ||||||||| ||||||||||||    
T  19852476 agtgctctccgatagacttgga 19852455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 16593797 - 16593918
Alignment:
Q  211 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctt 310  Q
    |||||| | ||||||||||||||||||| |||||| ||||| ||||||| |||  |||| ||||| ||| ||| ||||||| |||||||||||||| |||    
T  16593797 ctttggcgttactcttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttctctgcctt 16593896  T
Q  311 agtgctctcagatagacttgga 332  Q
    ||||||||| ||||||||||||    
T  16593897 agtgctctccgatagacttgga 16593918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 24239870 - 24239989
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtct 309  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||  |||| ||||| | ||||||| |||||||||   | ||  || ||    
T  24239870 gcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattcacctacttcttctt---tctcgatgcct 24239966  T
Q  310 tagtgctctcagatagacttgga 332  Q
    |||||||||||||||||||||||    
T  24239967 tagtgctctcagatagacttgga 24239989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 7492330 - 7492271
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 70  Q
    ||||||||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||    
T  7492330 cagagatacatagagtaaaacctattaaaagagaatccggatcaatcccaagaaaggaaa 7492271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 37050326 - 37050195
Alignment:
Q  18 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatagaaaacta 117  Q
    |||||| ||||||||||||||||||||||| || |||||||||| ||| | || | || || ||| ||||| ||||| |||  || |||| | |||||||    
T  37050326 acatagtgtaaaacctatgaaaagagaaactggatctatcccaataaagggaatgtccaaaggaacgaggtatcaaagacaaccaatgaacaaaaaacta 37050227  T
Q  118 gtc-aaactatgaccattctaggccaaacaac 148  Q
    ||| ||| ||||||||| || |||||||||||    
T  37050226 gtcaaaagtatgaccatacttggccaaacaac 37050195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 451
Target Start/End: Complemental strand, 19852397 - 19852306
Alignment:
Q  351 ctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggttgcag 450  Q
    |||||||||  ||||| |||||||||||||||||||||||| |||||         | ||||||||||||||||||| ||||||||||||| || |||||    
T  19852397 ctcttgtcagagctgatagtgtcctccatcacctcttctacatcttc---------cccccaaaatttggaaagaatttgcacactctttagggctgcag 19852307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 7500381 - 7500322
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 70  Q
    |||| |||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||    
T  7500381 cagaaatacatagagtaaaacctattaaaagagaatccggatcaatcccaagaaaggaaa 7500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 16593976 - 16594057
Alignment:
Q  351 ctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacactcttta 441  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||         | ||||||||||||||| ||| |||||||||||||    
T  16593976 ctcttgtcagtgctgatagtgtcctccatcacctcttctacttcttc---------cccccaaaatttggaaataatttgcacactcttta 16594057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 16832167 - 16832289
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtct 309  Q
    |||||||||| || ||||||  |||| ||||||||| |  ||||||||||| ||  |||| ||||| ||||||| |||||||| ||| || |||||| ||    
T  16832167 gctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttcttattccttctctctgcct 16832266  T
Q  310 tagtgctctcagatagacttgga 332  Q
    |||| |||| ||| ||| |||||    
T  16832267 tagttctctaagaaagagttgga 16832289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 16832337 - 16832387
Alignment:
Q  344 ctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttc 394  Q
    |||||| || ||||||||||||| |||||||| ||||||||||||||||||    
T  16832337 ctcaagtcttttgtcatggctgaaagtgtccttcatcacctcttctacttc 16832387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 191 - 441
Target Start/End: Complemental strand, 25167955 - 25167714
Alignment:
Q  191 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 290  Q
    |||||||| ||||||||||||||||||||||| |||||||||| | |||||| || ||||||||||||| ||| ||||| ||||| ||||||| || |||    
T  25167955 ttctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttgttcacatgtttc 25167856  T
Q  291 ttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttcta 390  Q
    ||||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||       
T  25167855 ttcttctttctctctgccttagtgctttcagatagacttggatagtcttccatctcaagccacttgtcatggttgaaagtgtcctccatcacctctt--- 25167759  T
Q  391 cttcttctacctcatcctcccaaaatttggaaagaatctgcacactcttta 441  Q
          ||||||| ||| ||||||||||||||||||| |||||||||||||    
T  25167758 ------ctacctcttccccccaaaatttggaaagaatttgcacactcttta 25167714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 10990117 - 10990004
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtct 309  Q
    |||||||||| || |||||| ||||| ||||||||||||||| ||||||||||| ||||  ||||| ||||| | |||| |||||||||| || ||| ||    
T  10990117 gctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttctttctcgctgcct 10990018  T
Q  310 tagtgctctcagat 323  Q
    ||||||||||||||    
T  10990017 tagtgctctcagat 10990004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 3949446 - 3949324
Alignment:
Q  191 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 290  Q
    ||||| || ||||||||||||||||||||||| ||| ||  |||| |||||||||  |||| ||||||| |||||| || ||||| | |||||||| |||    
T  3949446 ttctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcactttattcacctgtttc 3949347  T
Q  291 ttcttctttttctctgtcttagt 313  Q
    |||||||||  ||||| ||||||    
T  3949346 ttcttctttccctctgccttagt 3949324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 3949667 - 3949584
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaa 94  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||||| |||||| | || | ||||| ||| |||||||||||    
T  3949667 cagagacacatagtgtaaaacctatgaaaagagaaaccggatctatcctaagaaagggaatgacctaaggaacgaggtgtcaaa 3949584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 4263398 - 4263501
Alignment:
Q  212 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtctta 311  Q
    |||||||| || |||||| ||||||||||||||| ||||||||||||| |||  |||| ||| | |||| || ||   ||||||||||||||||| ||||    
T  4263398 tttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttgtttacatg---cttcttctttttctctgcctta 4263494  T
Q  312 gtgctct 318  Q
    |||||||    
T  4263495 gtgctct 4263501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 29708995 - 29708949
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacactctt 439  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  29708995 tcttctacttcatccccccaaaatttggaaagaatctgcacactctt 29708949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 5605472 - 5605541
Alignment:
Q  25 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaa 94  Q
    |||||||||||||||||| ||  ||||| ||||| |||||| |||||| ||||| |||||||||||||||    
T  5605472 gtaaaacctatgaaaagaaaagtcgggtatatccaaagaaaggaaaggccctaaagaaagaggtgtcaaa 5605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 439
Target Start/End: Complemental strand, 10989952 - 10989861
Alignment:
Q  339 tccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttctacttcttctacctcatcctcccaaaatttggaaagaatctgcacactct 438  Q
    |||| |||||| |||||| ||||||||||||  |||||||||||||||         ||||  |||||| |||||||||||||||||||||| |||||||    
T  10989952 tccacctcaagtctcttgccatggctgagagcttcctccatcacctct---------tctaagtcatccccccaaaatttggaaagaatctgtacactct 10989862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 29709157 - 29709111
Alignment:
Q  336 tcttccatctcaagcctcttgtcatggctgagagtgtcctccatcac 382  Q
    |||||||||||  | |||||||||||||||||||| |||||||||||    
T  29709157 tcttccatctccggtctcttgtcatggctgagagtttcctccatcac 29709111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 13535225 - 13535133
Alignment:
Q  164 atctatacttttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagt 255  Q
    |||||||||||||||| || ||||| | || ||||  || |||| | ||||||||| || || |||||||| ||||||||||| |||||||||    
T  13535225 atctatacttttgcaaatgaaccaactattatgtagctgccaagacagctttggagttaatcctttgggcaagggtcctcattccggctgagt 13535133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 191 - 441
Target Start/End: Complemental strand, 19215494 - 19215245
Alignment:
Q  191 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 290  Q
    |||||||| || |||||| | |||| |||||| ||||||||| ||||||||||||  |||||||||||||||| | ||||||||| ||||||||||||||    
T  19215494 ttctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttcacctgcttc 19215395  T
Q  291 ttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctccatcacctcttcta 390  Q
    |||||| || |||||||||||||||||||| |||| |||||| ||||||||||||| |||||||| |||||||| | ||||||||| | || ||||||||    
T  19215394 ttcttcattctctctgtcttagtgctctcaaataggcttggatagtcttccatctctagcctcttatcatggctaatagtgtcctctaacatctcttcta 19215295  T
Q  391 cttcttctacctcatcctcccaaaatttggaaagaatctgcacactcttta 441  Q
    |||| |||||||||||| | ||||||||| ||||||| |||||||||||||    
T  19215294 cttcatctacctcatcc-ctcaaaatttgaaaagaatttgcacactcttta 19215245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 174 - 417
Target Start/End: Original strand, 788265 - 788509
Alignment:
Q  174 ttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatc 272  Q
    |||||| || ||||||| |||| ||| |||||||||||||||||||| || |||||||||||| ||||||||  || ||||||||||| || ||||| ||    
T  788265 ttgcaattgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttc 788364  T
Q  273 actctgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgt 372  Q
    | | |||||| |||||||||||||||| |||||| |||| |||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||     
T  788365 attttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagtcttctatttcaagcctcttgtcatggctgagagtga 788464  T
Q  373 cctccatcacctcttctacttcttctacctcatcctcccaaaatt 417  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  788465 cctccatcacctcttctacttcttctgcatcatccccccaaaatt 788509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 19215712 - 19215560
Alignment:
Q  11 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 110  Q
    ||||||| |||||| ||||||||||||||||||||||  | ||||| |||||||| |||||| |||||||||| |||||||||| |||  ||||  | ||    
T  19215712 cagagatgcatagactaaaacctatgaaaagagaaactagatctattccaagaaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacag 19215613  T
Q  111 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgcc 163  Q
    ||||||||||||| |||| |  |||| |||||||||||||||| |||||||||    
T  19215612 aaaactagtcaaattatgtctgttcttggccaaacaacagctaaaagactgcc 19215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 32278505 - 32278637
Alignment:
Q  18 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag-aaaact 116  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| || | ||||| ||| ||||||||||| |||  || |||| || ||||||    
T  32278505 acatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaaggaatgtcctaaggaacgaggtgtcaaagacaaccaatgaacagaaaaact 32278604  T
Q  117 agtc-aaactatgaccattctaggccaaacaac 148  Q
    |||| ||| |||||||||||| |||||||||||    
T  32278605 agtcaaaagtatgaccattcttggccaaacaac 32278637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 194 - 332
Target Start/End: Complemental strand, 36868401 - 36868263
Alignment:
Q  194 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 293  Q
    ||||| ||||||||  |||||||||| || ||||||| |||||| ||||||| ||||||||||||||||| ||||| ||||| | ||||| |||||||||    
T  36868401 tgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcactttattcacttgcttcttc 36868302  T
Q  294 ttctttttctctgtcttagtgctctcagatagacttgga 332  Q
    |||||| ||||   |||| |||||||||||  |||||||    
T  36868301 ttctttctctccaccttattgctctcagattaacttgga 36868263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 407
Target Start/End: Complemental strand, 35811154 - 35811028
Alignment:
Q  279 ttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagcctcttgtcatggctgagagtgtcctcca 378  Q
    ||||||||||||||||||| | |||||||||||||| | ||| ||| | ||||| | ||||||||||||| |||||| || ||||||| ||| |||||||    
T  35811154 ttcacctgcttcttcttctatctctctgtcttagtgttatcaaataaatttggataatcttccatctcaaacctcttatcctggctgatagtatcctcca 35811055  T
Q  379 tcacctcttctacttcttctacctcatcc 407  Q
    ||||  |||||||||||||||| ||||||    
T  35811054 tcac--cttctacttcttctacatcatcc 35811028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 32278714 - 32278792
Alignment:
Q  191 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggc 269  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||  || ||||| ||||||||||||| ||| |||||    
T  32278714 ttctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggc 32278792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 788078 - 788217
Alignment:
Q  19 catagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatagaaaactag 118  Q
    ||||| |||||| |||| ||||||||||  |  ||||| |||||||| |||||  | ||| ||||||||||||||| |||  |||||  || ||||||||    
T  788078 catagtgtaaaatctataaaaagagaaaatgaatctattccaagaaaggaaagaccttaaggaaagaggtgtcaaagacaaccattg--taaaaaactag 788175  T
Q  119 tcaaactatgaccattctaggccaaacaacagctacaagact 160  Q
     |||| |||||||||||  |||||||| ||||||| ||||||    
T  788176 acaaattatgaccattcatggccaaaccacagctaaaagact 788217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 15188140 - 15188037
Alignment:
Q  226 tttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtcttagtgctctcagatag 325  Q
    ||||||||||||||||||||   |||||||||||||||  |||| ||||| || |||  |||||||   ||||||||||||  |||||||||||| ||||    
T  15188140 tttgggcacgggtcctcattctagctgagttaaagctatcaggcttcactttgctcatatgcttct---tctttttctctgcattagtgctctcatatag 15188044  T
Q  326 acttgga 332  Q
     ||||||    
T  15188043 gcttgga 15188037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 37307261 - 37307313
Alignment:
Q  277 tgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagactt 329  Q
    ||||||| ||||||||||||||| |||||  ||||||||||||||| ||||||    
T  37307261 tgttcacatgcttcttcttctttctctctaccttagtgctctcagacagactt 37307313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 15187994 - 15187952
Alignment:
Q  393 tcttctacctcatcctcccaaaatttggaaagaatctgcacact 436  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  15187994 tcttctacctcatcc-cccaaaatttgcaaagaatctgcacact 15187952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 36150672 - 36150718
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagtt 256  Q
    ||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  36150672 gctttggaggtatccttttgggcacgagtcctcattccggctgagtt 36150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 36868583 - 36868515
Alignment:
Q  25 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaa 94  Q
    |||| ||||||||||||| ||| ||| |||||||||||||| |||| | ||||| |||| ||||||||||    
T  36868583 gtaagacctatgaaaagaaaaatcggatctatcccaagaaaggaaaagacctaa-gaaaaaggtgtcaaa 36868515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 10352 - 10230
Alignment:
Q  210 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttctctgtct 309  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||  |||| ||||| ||| ||| |||||||||||||||||||||| ||    
T  10352 gctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgcct 10253  T
Q  310 tagtgctctcagatagacttgga 332  Q
    |||||||||| ||||||||||||    
T  10252 tagtgctctccgatagacttgga 10230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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