View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16790_low_9 (Length: 457)
Name: NF16790_low_9
Description: NF16790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16790_low_9 |
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| [»] scaffold0027 (3 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 183 - 437
Target Start/End: Complemental strand, 46461 - 46206
Alignment:
| Q |
183 |
tttagcatttttcttgaacagactaaactaggaaaataaaatgttaataagaacgaattaacttctcggtcaaatttcacaaatgagttgctatgttact |
282 |
Q |
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| T |
46461 |
tttagcatttttcttgaacagactaaactaggaaaataaaatgttaataagagcgaattaacttctcggtcaaatttcacaaatgagttgctatcttact |
46362 |
T |
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| Q |
283 |
caatttctctttcatannnnnnnnattnnnnnnnntat--tcatttgaatcggtagataaaatcaagaacaataaaaattttgtgtcattgaaacttaaa |
380 |
Q |
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| T |
46361 |
cggtttctctttcatattttttt-attaaaaaaaatatattcatttaaatcggtagataaaatcaacaacaataaaaattttgtgtcattgaaacttaaa |
46263 |
T |
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| Q |
381 |
agatgaatttgcaactaaatttacatcattgaagtcaatatcataaatcggtataat |
437 |
Q |
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| T |
46262 |
agatgaaattgcaactaaatttacatcattgaagtcaatatcataaatcggtataat |
46206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 46862 - 46777
Alignment:
| Q |
15 |
caaaggcaaaggaagggctacgacaacgaggagataacatgcagacgcacaaaaatggagggaacacgacgtcgataagccgcaaa |
100 |
Q |
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| T |
46862 |
caaaggcaaaggaagggctacgacaacgaggagatgacatgcagacgcacaaaaatggagggaacacgacgtcgataagccgcaaa |
46777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 46625 - 46533
Alignment:
| Q |
93 |
gccgcaaagcacgagcccgagtgaatagaatgaagctgctgaatgatagaatgaattacgcttcagttcttcaatttggtgaaggtttggttt |
185 |
Q |
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| T |
46625 |
gccgcaaagcacgagccggagtgaatagaatgaagctgctgaatgatgagatgaattacgcttcagttcttcaatttggtgaaggtttggttt |
46533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 26605288 - 26605358
Alignment:
| Q |
17 |
aaggcaaaggaagggctacgacaacgaggagataacatgcagacgcacaaaaatggagggaacacgacgtcg |
88 |
Q |
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| T |
26605288 |
aaggcaaaggagcggctacaacaccgaggagatgacacgcagacgcac-aaaatggagggaacacgacgtcg |
26605358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 51628989 - 51629039
Alignment:
| Q |
377 |
taaaagatgaatttgcaactaaatttacatcattgaagtcaatatcataaa |
427 |
Q |
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| T |
51628989 |
taaaagatgaatttgcaaataaattcacatcatttaagttaatagcataaa |
51629039 |
T |
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