View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_high_10 (Length: 400)
Name: NF16791_high_10
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 41520517 - 41520914
Alignment:
| Q |
1 |
taaactcctacattgttcgaacaataaaaaattgtttacaatattcacattaatatgagcatttaagttttaaacaataaaaacttcaaacattagataa |
100 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41520517 |
taaactcctacattgttcgaacaataataaattgtttacaatattcacgttaatatgagcatttaagttttaaacaataaaaacttcaaacattagataa |
41520616 |
T |
|
| Q |
101 |
taacggcttcagacttaccatgggtgtgttctaatcttccgagtcttcgtcatacccttgatcatgattggaatttgttgaatgattttgtgattctaca |
200 |
Q |
| |
|
||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41520617 |
taacggcttcagacttaccataggcgtgttccaatcttccgagtcttcgtcatacccttgatcatgattggaatttgttgaatgattttgtgattctaca |
41520716 |
T |
|
| Q |
201 |
ttaaagtcttctcgtaaacgacaagattgccggttgtgacccttaactc--catattccacatttaggcgaactccgctttctttttccacttgcattat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41520717 |
ttaaagtcttctcgtaaacgacaagattgccggttgtgacccttaactccacatattccacatttaggcgaacttcgctttctttttccacttgcattat |
41520816 |
T |
|
| Q |
299 |
gagatgacgacgcaactgctgctccacctcttttcttaagccattgcggattacctaaactttttcctatcactgaactgaacacaggcaattcatca |
396 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
41520817 |
gcgatgacgacgcaactgctgctccacctcttttcttaagctgttgcggattacctaaactttttcctgtcactgaaccgaacatgggcaattcatca |
41520914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 27049043 - 27049440
Alignment:
| Q |
1 |
taaactcctacattgttcgaacaataaaaaattgtttacaatattcacattaatatgagcatttaagttttaaacaataaaaacttcaaacattagataa |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
27049043 |
taaacttctacactgttcgaacaataataaattatttacaatattgacgctaatatgagcatttaagttttaaacaataaaaacttaaaacattagatag |
27049142 |
T |
|
| Q |
101 |
taacggcttcagacttaccatgggtgtgttctaatcttccgagtcttcgtcatacccttgatcatgattggaatttgttgaatgattttgtgattctaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27049143 |
taacggcttcagacttaccatgggtgtgttccaatcttcagagtcttcatcatacccttgatcatgattggaatttgttgattgattttgtgattctaca |
27049242 |
T |
|
| Q |
201 |
ttaaagtcttctcgtaaacgacaagattgccggttgtgacccttaactc--catattccacatttaggcgaactccgctttctttttccacttgcattat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
27049243 |
ttaaagtcttctcgtaaacgacaagattgccggttgtgacccttaactccacatattccacattttggcgaactccgctttctttttccacttgcattac |
27049342 |
T |
|
| Q |
299 |
gagatgacgacgcaactgctgctccacctcttttcttaagccattgcggattacctaaactttttcctatcactgaactgaacacaggcaattcatca |
396 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |
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|
| T |
27049343 |
gagatgacgacgcagctgatgctccacctcttttcttaagccgttgcggattacctaaactttttcctgccactgaaccgaacacgtgcaattcatca |
27049440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 7659423 - 7659371
Alignment:
| Q |
314 |
ctgctgctccacctcttttcttaagccattgcggattacctaaactttttcct |
366 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
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|
| T |
7659423 |
ctgctgctccacctcttttcctaagccgttgcggattacctaaacttcttcct |
7659371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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