View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_high_12 (Length: 374)
Name: NF16791_high_12
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 337
Target Start/End: Original strand, 42071558 - 42071872
Alignment:
| Q |
23 |
aatatgtcactagtttctttatgattagatgtttgaataaatggtgaatttgacaaaatcacagtttcaaaatatagcttttgtcaaaatcacgtaggct |
122 |
Q |
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| T |
42071558 |
aatatgtcattagtttctttatgattagatgtttgaataaacggtgaatttgacaaaatcacagtttcaaaatatagcttttgtcaaaatcacgtaggct |
42071657 |
T |
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| Q |
123 |
catcaaaattgtgtctatgtaagaatatatgttgaaaaatgttaaaacctaaaatagatgctagtatctcgagagattagtttgtacatatcagtctaga |
222 |
Q |
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| T |
42071658 |
catcaaaattgtgtctatggaagaatatatgttgaaaaatgttaaaacctaaaatagatgttagtatctcgagagattagtttgtacatatcagtctaga |
42071757 |
T |
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| Q |
223 |
tatctgaattcatataacaacaaacacttcggatcaaagacatacatgtctaatgttcaaatggaacatatggttacattcaattaatcaattttctcaa |
322 |
Q |
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| T |
42071758 |
tatctgaattcatacaacaacgaacacttcggatcaaagacatacatgtctaatgttcaaatggaacatatggttacattcaattaatcaattttctcaa |
42071857 |
T |
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| Q |
323 |
tttattattatcggt |
337 |
Q |
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| T |
42071858 |
tttattattatcggt |
42071872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 42055473 - 42055589
Alignment:
| Q |
138 |
tatgtaagaatatatgttgaaaaatgttaaaacctaaaatagatgctagtatctcgagaga--ttagtttgtacatatcagtctagatatctgaattcat |
235 |
Q |
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| T |
42055473 |
tatgtaagaacatttgttgaaaaatgttaacccctcaaatagatgttagtatctcgagagagattagtctttgcataccggcatagatatctgaattcac |
42055572 |
T |
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| Q |
236 |
ataacaacaaacacttc |
252 |
Q |
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| T |
42055573 |
ctaacaataaacacttc |
42055589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 42080614 - 42080768
Alignment:
| Q |
175 |
aatagatgctagtatctcgagagattagtttgtacatatcagtctagatatctgaattcatataacaacaaacacttcggatcaaagacatacatgtcta |
274 |
Q |
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| T |
42080614 |
aatagatgttagtatctcgtatgattggtctttgcatatcggtttaggtatctgaattcatctaacaatagacacttcatatcgaaggcat----gtttt |
42080709 |
T |
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| Q |
275 |
atgttcaaatggaacatatggttacattcaattaatcaattttctcaatttattattat |
333 |
Q |
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| T |
42080710 |
atatttaaatggcacatatggttacattcaatttttcaattttctcaatatactattat |
42080768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 9483433 - 9483390
Alignment:
| Q |
288 |
acatatggttacattcaattaatcaattttctcaatttattatt |
331 |
Q |
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| T |
9483433 |
acatatggttacattcaattattctattttctcaaattattatt |
9483390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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