View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16791_high_13 (Length: 356)

Name: NF16791_high_13
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16791_high_13
NF16791_high_13
[»] chr5 (3 HSPs)
chr5 (32-346)||(4984303-4984600)
chr5 (31-122)||(6434632-6434723)
chr5 (37-118)||(16993519-16993600)
[»] chr2 (2 HSPs)
chr2 (31-149)||(32601132-32601254)
chr2 (31-125)||(36065066-36065160)
[»] chr1 (2 HSPs)
chr1 (31-121)||(24780742-24780830)
chr1 (37-125)||(21425130-21425219)
[»] chr6 (1 HSPs)
chr6 (69-122)||(28523723-28523776)
[»] chr8 (1 HSPs)
chr8 (48-125)||(30838110-30838187)
[»] scaffold0010 (1 HSPs)
scaffold0010 (50-106)||(171125-171181)
[»] chr3 (1 HSPs)
chr3 (43-122)||(45884580-45884660)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 346
Target Start/End: Original strand, 4984303 - 4984600
Alignment:
Q  32 aatgacttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataatatgacttgagtgt 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||            
T  4984303 aatgatttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaagtacacataaactcaagtaaaataatatgaca------- 4984395  T
Q  132 tatacataagagctaaaattttgataccctggaagccaccctcttggtccatgctcgggtcacccctgtttttagttctaactgctcttggtgtacatta 231  Q
              ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4984396 ----------agtcaaaattttgataccctggatgccaccctcttggtccatgctcgggtcacccctgtttttagttctaactgctcttggtgtacatta 4984485  T
Q  232 ttttgaagaagnnnnnnngactttgcaagtagtactatatgcaattaaagaggtcatagcagaagatatctgacaagtcaaaatagtagctgagtgatta 331  Q
    |||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  4984486 ttttgaagaagaaaaaaagacttttcaagtagtactatatgcaattaaagaggtcatagcagaagatatctgacaagtccaaatagtagctcagtgatta 4984585  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 6434723 - 6434632
Alignment:
Q  31 caatgacttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataatatga 122  Q
    ||||||||||| |||||||| ||||||||| || || |||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||    
T  6434723 caatgacttgtgttaacaaagttgagatgggaaaattagagattgagaattgataagaaatgatacacataaactcgggtaaaataatatga 6434632  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 16993519 - 16993600
Alignment:
Q  37 cttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataat 118  Q
    ||||| |||||||||||||||  || | || | ||||||||||||  |||||||  |||||||||||||| |||||||||||    
T  16993519 cttgtgttaacaaaattgagacagagacattaaagattgagaattagaaagaaatgatacacataaactcgagtaaaataat 16993600  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 32601132 - 32601254
Alignment:
Q  31 caatgacttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactca-agtaaaataatatgac--ttga 127  Q
    ||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||  |||||||||||||||  |||||| ||||| ||  ||||    
T  32601132 caatgacttgtgttaacaaaattgggatggagagattaaagattgagaattgaaaagaaaggatacacataaactcactgtaaaacaatataacttttga 32601231  T
Q  128 gtgtt-atacataagagctaaaa 149  Q
    ||||| ||| |||||||||||||    
T  32601232 gtgttgatatataagagctaaaa 32601254  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 36065066 - 36065160
Alignment:
Q  31 caatgacttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataatatgactt 125  Q
    ||||||||||| |||||||||||||||| || |||| |||||||||||| | |||||| |  |||||| ||||||||  ||||||||||||||||    
T  36065066 caatgacttgtgttaacaaaattgagatagagagattagagattgagaactaaaaagataggatacacttaaactcacataaaataatatgactt 36065160  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 24780830 - 24780742
Alignment:
Q  31 caatgacttgtattaacaaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataatatg 121  Q
    |||| |||||| |||||||||||||||||||  ||  |||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  24780830 caataacttgtgttaacaaaattgagatgga--gactagagattgagaattgaaaagaaatgatacacataaactcaggtaaaataatatg 24780742  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 21425130 - 21425219
Alignment:
Q  37 cttgtattaacaaaattgagatggaaagatcagagattg-agaattgaaaagaaaaaatacacataaactcaagtaaaataatatgactt 125  Q
    ||||| ||||||||||||||||||| |||| |||||||| | ||||  |||||||  || |||||||||||   ||||| ||||||||||    
T  21425130 cttgtgttaacaaaattgagatggagagattagagattgaaaaattagaaagaaaggatccacataaactcggataaaacaatatgactt 21425219  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 28523776 - 28523723
Alignment:
Q  69 gagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataatatga 122  Q
    |||||||||||||  |||||||  ||||||||||||||| ||||||||||||||    
T  28523776 gagattgagaattagaaagaaaggatacacataaactcaggtaaaataatatga 28523723  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 30838110 - 30838187
Alignment:
Q  48 aaaattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactcaagtaaaataatatgactt 125  Q
    |||||||| ||||| |||| |||||| |||||||  |||||||  ||| ||||||| ||  |||||||||||||||||    
T  30838110 aaaattgaaatggagagattagagatcgagaattagaaagaaatgatagacataaattcgggtaaaataatatgactt 30838187  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 171181 - 171125
Alignment:
Q  50 aattgagatggaaagatcagagattgagaattgaaaagaaaaaatacacataaactc 106  Q
    |||||||||||| |||| |||||||||||| |  |||||||  ||||||||||||||    
T  171181 aattgagatggagagattagagattgagaactagaaagaaagtatacacataaactc 171125  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 45884580 - 45884660
Alignment:
Q  43 ttaacaaaattgagatggaaagatcagagattgagaatt-gaaaagaaaaaatacacataaactcaagtaaaataatatga 122  Q
    |||||| ||||||||| || |||| | | |||||||||| |||||||||  | ||||||||||||  ||||||||||||||    
T  45884580 ttaacagaattgagattgagagattataaattgagaattagaaaagaaaggaaacacataaactcgggtaaaataatatga 45884660  T

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