View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16791_high_20 (Length: 304)

Name: NF16791_high_20
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16791_high_20
NF16791_high_20
[»] scaffold0027 (1 HSPs)
scaffold0027 (27-304)||(47037-47314)


Alignment Details
Target: scaffold0027 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 47314 - 47037
Alignment:
Q  27 agaatttcactataaattatcatggtacatggttgcatgcataaataaccaataataaactattgcaaatgatatttgacccaagtaagggcacaagcaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47314 agaatttcactataaattatcatggtacatggttgcatgcatatttaaccaatactaaactattgcaaatgatatttgacccaagtaagggcacaagcaa 47215  T
Q  127 tgaaatcaacatattgtgggtttggttggaagttgagccaaccgttgaatattgcaatctacttttattccttttgcttctttttgtcattacacatcac 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47214 tgaaatcaacatattgtgggtttggttggaagttgagccaaccgttgaatattgcaatctacttttattccttttgcttctttttgtcattacacatcac 47115  T
Q  227 actttggatgctcctcactaccatccaatttgatatactttaaattggttcctctttatttactttgttacacaaaac 304  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47114 actttgggtgctcctcactaccatccaatttgatatactttaaattggttcctctttgtttactttgttacacaaaac 47037  T

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