View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_high_25 (Length: 264)
Name: NF16791_high_25
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 37553814 - 37554061
Alignment:
| Q |
1 |
aggtttgccggacaacttgatcgttgcgatccctcaccacttagctcttatgaactacaaacccatacattttaacaaaccaagagtaaaacatgcaggc |
100 |
Q |
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| T |
37553814 |
aggtttgccggataacttgatcattgcgatccctcaccacttagctcttatgaactacaaacccatacattttaacaaaccaagagtaaaacatgcaggc |
37553913 |
T |
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| Q |
101 |
aacatctaacccactagtacacgtttcagtggagatcgattaaaacttactatgaaattaaggcaaaggatacatgagtgaattttccagatattggttc |
200 |
Q |
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| T |
37553914 |
aacatctaacccactagtacacgttccagtggagatcgattaaaacttactatgaaattaaggcaaaggatacatgagtgaattttccaaatattggttc |
37554013 |
T |
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| Q |
201 |
attgaatgatggcagagaatcacttcaaggaacggttatgcttaattt |
248 |
Q |
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| T |
37554014 |
cttgaatgatggcagagaatcacttcaaggaacggttatgcttaattt |
37554061 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 11009632 - 11009599
Alignment:
| Q |
76 |
caaaccaagagtaaaacatgcaggcaacatctaa |
109 |
Q |
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| T |
11009632 |
caaaccaagagtaaaacatgtaggcaacatctaa |
11009599 |
T |
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