View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_high_27 (Length: 243)
Name: NF16791_high_27
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 4829765 - 4829985
Alignment:
| Q |
17 |
tcttcctcttctcttccttcnnnnnnncatcactttcatcattatcttcatcaactccatcaaacaaacccnnnnnnnnnttcccaaaatatggatttaa |
116 |
Q |
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| T |
4829765 |
tcttcctcttctcttccttctctttttcatcactttcatcattatcttcatcaactccatcaaacaaacccagaaaaaaattcccaaaaaatggatttaa |
4829864 |
T |
|
| Q |
117 |
aagaaactcttaatcatcaacctaatt-acttctnnnnnnncctctatttcttgatctttatccctaaatcataagaacccataaattttttagcacgac |
215 |
Q |
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|| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
4829865 |
aaaaaactcttaatcatcaacctaatttacttctaaaaaaacctctatttcttgatctttatccctaaattctaagaacccataaa-tttttagcacggc |
4829963 |
T |
|
| Q |
216 |
acataatatagagggagcaaat |
237 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4829964 |
acataatatagagggagcaaat |
4829985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 2131081 - 2131302
Alignment:
| Q |
16 |
ttcttcctcttctcttccttcnnnnnnncatcactttcatcattatcttcatcaactccatcaaacaaacccnnnnnnnnn-ttcccaaaatatggattt |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
2131081 |
ttcttcctcttctcttccttctctttttcatcactttcatcattatcttcatcaactccatcaaacaaacctagaaaaataattcccaaaaaatggattt |
2131180 |
T |
|
| Q |
115 |
aaaagaaactcttaatcatcaacctaattacttctnnnnnnn-cctctatttcttgatctttatccctaaatcataagaacccataaattttttagcacg |
213 |
Q |
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| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2131181 |
ataaaaaactcttaatcatcaacctaattacttctaaaaaaaacctctatttcttgatctttatccctaaattctaagaacccataaattttttagcacg |
2131280 |
T |
|
| Q |
214 |
acacataatatagagggagcaa |
235 |
Q |
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||||||||||||||||||||| |
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| T |
2131281 |
gcacataatatagagggagcaa |
2131302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 34653690 - 34653881
Alignment:
| Q |
44 |
catcactttcatcattatcttcatcaactccatcaaacaaacccnnnnnnnnntt-cccaaaatatggatttaaaagaaactcttaatcatcaacctaat |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||| |||||| ||||||||| ||||| |
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| T |
34653690 |
catcactttcatcattatcttcatcaactccatcaaacaaaccgagatttttttttcccaaaaaatggat--aaaaaaaactcaaaatcatcaaactaat |
34653787 |
T |
|
| Q |
143 |
tacttctnnnnnnncctctatttcttgatctttatccctaaatcataagaacccataaattttttagcacgacacataatatagagggagcaaat |
237 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||| ||| |||||||||||||||||| ||||| |
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| T |
34653788 |
tactta-aataaaacctctatttcttgatctttatccctaaattctaagaacccataaaaatattaacaccacacataatatagagggaacaaat |
34653881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 16363604 - 16363409
Alignment:
| Q |
44 |
catcactttcatcattatcttcatcaactccatcaaacaaacccnnnnnnnnnttcc--caaaatatggatttaaaagaaa-ctcttaatcatcaaccta |
140 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||| |||| ||| || | ||||||||| ||| |
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| T |
16363604 |
catcactttcatcattatcttcatcaactccatcaaacaaacccagaattttttttctccaaaaaatggataaaaaataaaactttaaatcatcaaacta |
16363505 |
T |
|
| Q |
141 |
attacttctnnnnnnncctctatttcttgatctttatccctaaatcataagaacccataaattttttagcacgacacataatatagagggagcaaat |
237 |
Q |
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||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
16363504 |
attactta-aaaaaaacctctatttcttgatctttattcctaaattctaagaacccataaaaaatttagcacaacacataatatagagggaacaaat |
16363409 |
T |
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