View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_high_30 (Length: 235)
Name: NF16791_high_30
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 9444928 - 9444749
Alignment:
| Q |
14 |
caaaggactaaggtcttacagtagacgtcgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccagg |
113 |
Q |
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| T |
9444928 |
caaaggactaaggtcttacagtagaagtcgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccagg |
9444829 |
T |
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| Q |
114 |
aaatttcaaatccatagcctagtgccttatgaatatctatgtatgaaacgttgcctataaaagaaataatatttacacac |
193 |
Q |
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| T |
9444828 |
aaatttcaaatccatagcctagtgccttatgaatatctatgtatgaaacgttgcctataaaagaaataatatttacacac |
9444749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 9425488 - 9425356
Alignment:
| Q |
40 |
gtcgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccaggaaatttcaaatccatagcctagtgcc |
139 |
Q |
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| T |
9425488 |
gtcgtaacacagaatgtcgccggcagggtccttgaggtagcaatgatcacaaggacaaaaggctagtatccaggaaatttcaaatccatagcctagtgcc |
9425389 |
T |
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| Q |
140 |
ttatgaatatctatgtatgaaacgttgcctata |
172 |
Q |
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| T |
9425388 |
ttatgaatatcgatgtatgacacattgcctata |
9425356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 9412592 - 9412720
Alignment:
| Q |
42 |
cgtaacactgaatctcgctagtagggtccttgaggtagcaataatcacaacgacaagaggcttgcatccaggaaatttcaaatccatagcctagtgcctt |
141 |
Q |
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| T |
9412592 |
cgtaacattgaatctcgccaatagtgtcgttgaggaagcattgatcacaaggacaagaggctttcatcgaagaaatttcaaatccatagcttaacgcctt |
9412691 |
T |
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| Q |
142 |
atgaatatctatgtatgaaacgttgccta |
170 |
Q |
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| T |
9412692 |
gtgaatatcaatatacgaaacgttaccta |
9412720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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