View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_high_6 (Length: 502)
Name: NF16791_high_6
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 8816907 - 8816436
Alignment:
| Q |
18 |
acttcaggggataaaaatgaaaaatgtaactgtggaagaagggaagaaagcagatgaaatgatgcttcttggaagtggagttcttgtttgccctatagtg |
117 |
Q |
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| T |
8816907 |
acttcaggggataaaaatgaaaaatgtaactgtggaagaagggaagaaagcagatgaaatgatgcttcttggaagtggagttcttgtttgccctatagtg |
8816808 |
T |
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| Q |
118 |
cagtgggatgaacaggttattggagacggtgcgtaatttcacttctattttcaataaatattcatgtgattttggattaattactatgatcatttttcat |
217 |
Q |
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| T |
8816807 |
cagtgggatgaacaggttattggagacggtgcgtaatttcacttctattttcaataaatattcatgtgattttggattaattactatgatcatttttcat |
8816708 |
T |
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| Q |
218 |
cctttagttttcttcgagtcaattaaatcccccgactttaaaagttgagtgaatttcgtcttgtcactgctggtttgtatatctgctatcaataacagta |
317 |
Q |
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| T |
8816707 |
cctttagttttcttcgagtcaattaaatcccccgactttaaaagttgagtgaatttcgtcttgtcactgctggtttgtatatctgctatcaataacggta |
8816608 |
T |
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| Q |
318 |
aaataataggatcctgcttttctatattgctaattcggtaatataattttctttcacttctttgggataaggaaaaaccgtcaaattcgcttggtttcat |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8816607 |
aaataatagggtcctgcttttctatattgctaattcggtaatataattttctttcacttctttgggataaggaaaaaccgtcaaattcgcttggtttcat |
8816508 |
T |
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| Q |
418 |
aatctggtttgtgttgacaattttatcatgctagaaaacaatcttttatgcattttacttttacttctctgc |
489 |
Q |
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| T |
8816507 |
gatctggtttgtgttgacaattttatcatgctagaaaacaatcttttatgcattttactttcacttctctgc |
8816436 |
T |
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