View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16791_high_8 (Length: 484)

Name: NF16791_high_8
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16791_high_8
NF16791_high_8
[»] chr8 (16 HSPs)
chr8 (1-468)||(6261887-6262354)
chr8 (5-152)||(6456117-6456264)
chr8 (22-122)||(6362116-6362216)
chr8 (62-122)||(6368891-6368951)
chr8 (62-122)||(7457972-7458032)
chr8 (62-122)||(7470374-7470434)
chr8 (62-173)||(6273391-6273502)
chr8 (36-122)||(6330783-6330869)
chr8 (62-116)||(6389879-6389933)
chr8 (67-173)||(6423097-6423203)
chr8 (5-122)||(6449680-6449797)
chr8 (67-122)||(6351231-6351286)
chr8 (297-392)||(6455969-6456064)
chr8 (36-122)||(6320321-6320407)
chr8 (73-113)||(6409131-6409171)
chr8 (62-116)||(6287699-6287753)
[»] chr2 (4 HSPs)
chr2 (2-173)||(42692108-42692279)
chr2 (297-412)||(42689772-42689887)
chr2 (303-391)||(42691982-42692070)
chr2 (5-173)||(42689572-42689740)
[»] chr5 (3 HSPs)
chr5 (58-150)||(9606272-9606364)
chr5 (294-404)||(9606416-9606526)
chr5 (58-113)||(9590626-9590681)
[»] chr1 (1 HSPs)
chr1 (4-122)||(36926297-36926415)
[»] chr7 (2 HSPs)
chr7 (67-173)||(46709125-46709231)
chr7 (360-416)||(46708974-46709030)


Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 6262354 - 6261887
Alignment:
Q  1 gacgagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6262354 gacgagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatatggactgcttcagctcttcatgcagctgttaatt 6262255  T
Q  101 ttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcctgagaaaggtacgtgttttgttttagtctctgcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262254 ttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcctgagaaaggtacgtgttttgttttagtctctgcaaa 6262155  T
Q  201 atttgttcatatcaaatgatatttattttatcgcgactaaaatcaaatattttacatattgcaggtactactgagtataatgagctagctaccaaccctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6262154 atttgttcatatcaaatgatatttattttatcgcgactaaaatcaaatattttacatattgcaggtactaccgagtataatgagctagctaccaaccctc 6262055  T
Q  301 agaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgagtactacct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262054 agaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgagtactacct 6261955  T
Q  401 tggacaaagagacagtgctgagtattggacttctgatacaaatgccatagcagccttcaagaagtttg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6261954 tggacaaagagacagtgctgagtattggacttctgatacaaatgccatagcagccttcaagaagtttg 6261887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 6456264 - 6456117
Alignment:
Q  5 agccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttgg 104  Q
    ||||||||||||| || |||||||||   | ||| ||| |||||  ||||   |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  6456264 agccatggtggcctaagatgcaaactgttggagacttggttcaatcttgctccattatcatatggactgcttcagctcttcatgcagcagttaactttgg 6456165  T
Q  105 acaatatccgtatggaggtttcatattaaaccgtccaactcttagtag 152  Q
    ||| ||||| |||||||| |  ||  | ||||||||||||||||||||    
T  6456164 acagtatccttatggaggatatatcctgaaccgtccaactcttagtag 6456117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 6362216 - 6362116
Alignment:
Q  22 atgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggag 121  Q
    ||||||||||| || ||||||||| ||| |||||  |   |||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  6362216 atgcaaactcgtgaggagttgattgaagcttgcaccaccctcatatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggag 6362117  T
Q  122 g 122  Q
    |    
T  6362116 g 6362116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 6368951 - 6368891
Alignment:
Q  62 tcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggagg 122  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  6368951 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatcagtatggagg 6368891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 7458032 - 7457972
Alignment:
Q  62 tcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggagg 122  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7458032 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggagg 7457972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 7470434 - 7470374
Alignment:
Q  62 tcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggagg 122  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7470434 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatgcgtatggagg 7470374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 6273502 - 6273391
Alignment:
Q  62 tcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaat 161  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| || |||| |||  | ||||| ||||||   || ||  |||||||    
T  6273502 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggttacattcttaaccgaccaactaaaagcagaagattaat 6273403  T
Q  162 gcctgagaaagg 173  Q
    |||| |||||||    
T  6273402 gcctaagaaagg 6273391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 6330869 - 6330783
Alignment:
Q  36 agagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggagg 122  Q
    |||||||||| ||| ||||| |||  |||| |||| ||||||||| | ||||||||||||||||||||| |||||||| ||||||||    
T  6330869 agagttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggagg 6330783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 6389933 - 6389879
Alignment:
Q  62 tcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgta 116  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6389933 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgta 6389879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 6423203 - 6423097
Alignment:
Q  67 tggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcctg 166  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| || |||||||| | |||  | ||||| ||||||   || ||| |||| |||||||    
T  6423203 tggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggaggatacatccttaaccgaccaactaagagcaggagattcatgcctg 6423104  T
Q  167 agaaagg 173  Q
    |||||||    
T  6423103 agaaagg 6423097  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 6449797 - 6449680
Alignment:
Q  5 agccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttgg 104  Q
    ||||||||||||| || |||||||||    |||| ||| |||||  ||||   ||||| || ||||||||||| ||||||||||||||||||||||| ||    
T  6449797 agccatggtggcctaagatgcaaactgttcaagacttggttcaatcttgctccattattatatggactgcttctgctcttcatgcagctgttaatttcgg 6449698  T
Q  105 acaatatccgtatggagg 122  Q
    ||||||||| || |||||    
T  6449697 acaatatccttacggagg 6449680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 6351286 - 6351231
Alignment:
Q  67 tggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggagg 122  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  6351286 tggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggagg 6351231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 6456064 - 6455969
Alignment:
Q  297 cctcagaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgag 392  Q
    ||||| ||||| || |||||||| |||||||| |||||||| || || ||||||||||| || || || |||||||| || |||||||||||||||    
T  6456064 cctcaaaaggcgtatttgagaactattacaccaaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatgag 6455969  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 6320407 - 6320321
Alignment:
Q  36 agagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggagg 122  Q
    |||||||||| ||| ||||| |||  |||| |||| ||||||||| | ||||||||||||||||||||| ||||| || ||||||||    
T  6320407 agagttgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatacccatatggagg 6320321  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 6409171 - 6409131
Alignment:
Q  73 gcttcagctcttcatgcagctgttaattttggacaatatcc 113  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  6409171 gcttcagcacttcatgcagctgttaattttggacaatatcc 6409131  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 6287753 - 6287699
Alignment:
Q  62 tcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgta 116  Q
    |||| |||| |||||| || |||||||| ||||||||||||||||||||||||||    
T  6287753 tcatatggattgcttcggcacttcatgcggctgttaattttggacaatatccgta 6287699  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 42692279 - 42692108
Alignment:
Q  2 acgagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattt 101  Q
    |||||||||||||||| || |||||| |||| |||||| |  |  ||||||||| || | |||| |||| ||||||||||||||||||||||||||||||    
T  42692279 acgagccatggtggcctaagatgcaagctcgtgaagagctagtcgaagtttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattt 42692180  T
Q  102 tggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcctgagaaagg 173  Q
    |||||| ||| | || |||||||| |||||||||||||||||||| |||||| |||| ||||||||||||||    
T  42692179 tggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcatgcctgagaaagg 42692108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 42689772 - 42689887
Alignment:
Q  297 cctcagaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgagtact 396  Q
    ||||| ||||| |||||||||||||| || ||||||||||| || || ||||| |||||||| |||||||||||||| || ||||||||||||||    |    
T  42689772 cctcaaaaggcttacttgagaacaatcacgccgaagtttcagactcttattgacctttcagtgatagaaatattgtcaagacatgcttctgatgaagttt 42689871  T
Q  397 accttggacaaagaga 412  Q
    ||||||||||||||||    
T  42689872 accttggacaaagaga 42689887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 42692070 - 42691982
Alignment:
Q  303 aaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatga 391  Q
    ||||| |||||||  |||||||||||||||||||| ||||| || || ||||| || |||||||||||||| ||||| |||||||||||    
T  42692070 aaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctttccgttatagaaatattgtcaaggcacgcttctgatga 42691982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 42689572 - 42689740
Alignment:
Q  5 agccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttgg 104  Q
    ||||||||||||| ||  ||||||| |  |||||| |  || ||| ||||| ||| ||||| ||||| |||||||| || || |||||||||||||||||    
T  42689572 agccatggtggcccaagttgcaaacacttgaagagcttgttgaagcttgcactatcatcatatggacggcttcagccctccacgcagctgttaattttgg 42689671  T
Q  105 acaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcctgagaaagg 173  Q
    ||||||||| || || ||||| ||  ||||||| |||||| | |||||  ||||| | |||||| ||||    
T  42689672 acaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttcctgaggaagg 42689740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 9606272 - 9606364
Alignment:
Q  58 attatcatctggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagt 150  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  ||  ||||||||||||| ||||||    
T  9606272 attatcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagt 9606364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 9606416 - 9606526
Alignment:
Q  294 aaccctcagaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgagt 393  Q
    |||||||| ||||| || ||||||||||||||||| || | |||||| || ||||||||||| || || || |||||||| || ||||||||||||||      
T  9606416 aaccctcaaaaggcatatttgagaacaattacaccaaaatatcaaaccctaattgatctttctgtgattgagatattgtctagacatgcttctgatgaaa 9606515  T
Q  394 actaccttgga 404  Q
     ||||||||||    
T  9606516 tctaccttgga 9606526  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 9590626 - 9590681
Alignment:
Q  58 attatcatctggactgcttcagctcttcatgcagctgttaattttggacaatatcc 113  Q
    |||||||| |||||| || | ||||||||||| |||||||| ||||||||||||||    
T  9590626 attatcatatggactactcctgctcttcatgctgctgttaactttggacaatatcc 9590681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 36926297 - 36926415
Alignment:
Q  4 gagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatctggactgcttcagctcttcatgcagctgttaattttg 103  Q
    ||||| |||||||| || ||||| |||| ||||||| ||||| ||  ||||| |||||| || |||| |||||||||||| ||||| || || || ||||    
T  36926297 gagccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttg 36926396  T
Q  104 gacaatatccgtatggagg 122  Q
    |||| ||||| ||||||||    
T  36926397 gacagtatccatatggagg 36926415  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 46709231 - 46709125
Alignment:
Q  67 tggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcctg 166  Q
    |||| |||||||||||| ||||||||||| || |||||||||||||| | || ||||| |  |  ||||||||||||  | ||| | ||||| |||||||    
T  46709231 tggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcctg 46709132  T
Q  167 agaaagg 173  Q
    |||||||    
T  46709131 agaaagg 46709125  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 46709030 - 46708974
Alignment:
Q  360 atagaaatattgtcgaggcatgcttctgatgagtactaccttggacaaagagacagt 416  Q
    |||||||| ||||| |  ||| |||||||||||  ||||||||||||||||||||||    
T  46709030 atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagt 46708974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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