View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_11 (Length: 387)
Name: NF16791_low_11
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 3856587 - 3856940
Alignment:
| Q |
17 |
acaaaggtaaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaatcaagacctctcatttctagacaatataa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3856587 |
acaaaggtaaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaaccaagacctctcatttctagacaatataa |
3856686 |
T |
|
| Q |
117 |
atggcgtttctgatgagaacaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaattt |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856687 |
atggcgtttctgatgagaaaaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaattt |
3856786 |
T |
|
| Q |
217 |
atacaccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattct |
316 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
3856787 |
atacaccataatacaggttgttgatggtgatgaataaaaatattttaaatagcatgaag----ttatcttatttatattcaactaacattaattcattct |
3856882 |
T |
|
| Q |
317 |
ttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856883 |
ttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
3856940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 3865344 - 3865697
Alignment:
| Q |
17 |
acaaaggtaaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaatcaagacctctcatttctagacaatataa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3865344 |
acaaaggtaaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaaccaagacctctcatttctagacaatataa |
3865443 |
T |
|
| Q |
117 |
atggcgtttctgatgagaacaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaattt |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3865444 |
atggcgtttctgatgagaaaaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaattt |
3865543 |
T |
|
| Q |
217 |
atacaccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattct |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
3865544 |
atacaccataatacaggttgttgatggtgatgaataaaaatattttaaatagcatgaag----ttatcttatttatattcaactaacattaattcattct |
3865639 |
T |
|
| Q |
317 |
ttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3865640 |
ttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
3865697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 5441266 - 5440930
Alignment:
| Q |
20 |
aaggtaaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaatcaagacctctcatttctagacaatataaatg |
119 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||| || |||||||||| | |||||| |
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| T |
5441266 |
aaggtaaacgaaggtgaaaaaaaccgtatacataagaaactattggaattgactcttggcaagagaaaccaagacctttcttttctagacagtgtaaatg |
5441167 |
T |
|
| Q |
120 |
gcgtttctgatgagaacaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttata |
219 |
Q |
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| | |||| |||||| ||||||||||||||||||||||| || || |||||| || || | ||| ||| || ||||||||||||||||||||||| |
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| T |
5441166 |
gtgcttctaatgagagcaagataaagggttatatagaggaacactcatgtttagagaagaatggagagaat--gtc-agtgcttcattcaagaatttata |
5441070 |
T |
|
| Q |
220 |
caccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattctttc |
319 |
Q |
| |
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||||||| ||||||||||| |||| || ||||||||||||||||||||| || || ||| ||| ||||||||||||||||| |||| | |||| ||| |
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| T |
5441069 |
caccatagtacaggttgttaatgtcgacgaataaaaatattttaaatagtat-aaatta---atcctatttatattcaactaacattagtgcattttttt |
5440974 |
T |
|
| Q |
320 |
agtcggtgcaacaagatgaagaactgaaagcttttcagaaaaca |
363 |
Q |
| |
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|||||||||| | || ||||||||| ||||||||||| |||||| |
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| T |
5440973 |
agtcggtgcagcgaggtgaagaactaaaagcttttcaaaaaaca |
5440930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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