View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_15 (Length: 343)
Name: NF16791_low_15
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1252087 - 1251826
Alignment:
| Q |
1 |
gttgtttctatatctacaaaattttatatgcacttattaatattttttcaactatat--------ccttattaatactaacaattatcttgataaatatg |
92 |
Q |
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| T |
1252087 |
gttgtttctatatctacaaaattttatatgcacttattaatattttttcaactatatgtctatatccttattaataccaacaattatcttgataaatatg |
1251988 |
T |
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| Q |
93 |
aaaaataaatgtatatatacaaaaatgacaatttagtaaaagtaac--atatttttagataaatttgtgatttcaacaa--ttttttatcaatactcatg |
188 |
Q |
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| T |
1251987 |
aaaaataaatgtatatatacaaaaatgacaatttagtaaaagtaacatatatttttagataaatttgtgatttcaacaattttttttaacaatactcatg |
1251888 |
T |
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| Q |
189 |
atttttattgtaaagtagttttat-aaaaaagatggtcagataagtagagtaattagtaata |
249 |
Q |
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| T |
1251887 |
atttttattgtaaagtagttttataaaaaaagatggtcagataagtagagtaattagtaata |
1251826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 1250198 - 1250122
Alignment:
| Q |
260 |
ccattgtaaccacatgtgactataaatttaaaacgtcacatgccgaattttaatcaggacatgaatcatgatgatgt |
336 |
Q |
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| T |
1250198 |
ccattgtaaccacatgtgactataaatttaaaacgtcacatgccgaattttaatcaggacatgaatcatgatgatgt |
1250122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 40344200 - 40344285
Alignment:
| Q |
11 |
tatctacaaaattttatatgcacttattaatattttttcaactatatccttattaatactaacaattatcttgataaatatgaaaaat |
98 |
Q |
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| T |
40344200 |
tatctacaaatttatatatgcatttattattattttttcaactttacccttattaatactaccaattatctt--aaaatatgaaaaat |
40344285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 12732 - 12630
Alignment:
| Q |
43 |
ttttttcaactatatccttattaatactaacaattatcttgataaatatgaaaaa-------taaatgtatatatacaaaaatgacaatttagtaaaagt |
135 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| | || ||||| ||||||||||||| ||| |
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| T |
12732 |
ttttttcaactatatccttattaatactacaaattatcttg--gaatatgaaaaatcaacattaaatgtatttgtataaaaaggacaatttagtaatagt |
12635 |
T |
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| Q |
136 |
aacat |
140 |
Q |
| |
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||||| |
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| T |
12634 |
aacat |
12630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 46038329 - 46038265
Alignment:
| Q |
13 |
tctacaaaattttatatgcacttattaatattttttcaactatatccttattaatactaacaatta |
78 |
Q |
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| T |
46038329 |
tctacaaatttttaaatgcatttatcact-ttttttcaactatacccttattaatactaccaatta |
46038265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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