View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_17 (Length: 335)
Name: NF16791_low_17
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 48845219 - 48844914
Alignment:
| Q |
17 |
cagaccctgcataagaattctagcaatatggtttaatggaagnnnnnnntacaagctactaaaatgaaccgtaatgtggattatttgttcataattttat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48845219 |
cagaccctgcataagaattctagcaatatggtttaatggaagaaaaaaatacaagctactaaaatgaaccgtaatgtggattttttgttcataattttat |
48845120 |
T |
|
| Q |
117 |
tcttatgggaatgatacgagtttgcttacctnnnnnnnntccaatttctcaaagtaggatgaatccctattcttcatatttaatacttctcttacattca |
216 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48845119 |
tcttatgggaatgatacgagtttgcttacctaaaaaaaatccagtttctcaaagtaggatgaatccctattcttcatatttaatacttctcttacattca |
48845020 |
T |
|
| Q |
217 |
tgaaaaaatcttacatcattcaaataaagtgtatagaaaaaattgaatatatctttaacttgatgtaaaatagaagtgcttatttcatttgttattttta |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48845019 |
tgaaaaaatcttacagcattcaaataaagtgtatagaaaaaattgaatatatctttaacttgatgtaaaatagaagtgtttatttcatttgttattttta |
48844920 |
T |
|
| Q |
317 |
ttgttc |
322 |
Q |
| |
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|||||| |
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| T |
48844919 |
ttgttc |
48844914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 7017624 - 7017929
Alignment:
| Q |
17 |
cagaccctgcataagaattctagcaatatggtttaatggaagnnnnnnntacaagctactaaaatgaaccgtaatgtggattatttgttcataattttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7017624 |
cagaccctgcataagaattctagcaatatggtttaatggaagaaaaaaatacaagctactaaaatgaactgtaatgtggattatttgttcataattttat |
7017723 |
T |
|
| Q |
117 |
tcttatgggaatgatacgagtttgcttacctnnnnnnnntccaatttctcaaagtaggatgaatccctattcttcatatttaatacttctcttacattca |
216 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7017724 |
tcttatgggaatgatacgagtttgcttacctaaaaaaaatccagtttctcaaagtaggatgaatccctattcttcatatttaatacttctcttacattca |
7017823 |
T |
|
| Q |
217 |
tgaaaaaatcttacatcattcaaataaagtgtatagaaaaaattgaatatatctttaacttgatgtaaaatagaagtgcttatttcatttgttattttta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7017824 |
tgaaaaaatcttacatcattcaaataaagtgtatagaaaaaattgaatatatctttaacttgatgtaaaatagaagtgtttatttcatttgttatttttg |
7017923 |
T |
|
| Q |
317 |
ttgttc |
322 |
Q |
| |
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|||||| |
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| T |
7017924 |
ttgttc |
7017929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 40979363 - 40979237
Alignment:
| Q |
158 |
caatttctcaaagtaggatgaatccctattcttc----atatttaatacttctcttacattcatgaaaaaatcttacatcattcaaataaagtgtataga |
253 |
Q |
| |
|
||||||||| |||||| || |||| |||||||| ||||| ||||||||||||||||||||||| | |||||| | |||||| ||| ||| |||||| |
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| T |
40979363 |
caatttctccaagtagaataaatctctattcttactttatattcaatacttctcttacattcatgaacacatcttagagcattcagatagagtctataga |
40979264 |
T |
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| Q |
254 |
aaaaattgaatatatctttaacttgat |
280 |
Q |
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| ||||||||||||| || |||||||| |
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| T |
40979263 |
agaaattgaatatattttaaacttgat |
40979237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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