View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_18 (Length: 331)
Name: NF16791_low_18
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 67 - 282
Target Start/End: Original strand, 43587789 - 43588006
Alignment:
| Q |
67 |
tcattatcatcattatcatgaataaggaacaataatcaaagtaaactcatataatgcttgctaacaagaatgccnnnnnnnnnnnn--ggcataaatata |
164 |
Q |
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| T |
43587789 |
tcatcatcatcattatcatgaataaggaacaatattcaaagtaaactcatataatgcttgctaacaagaataccaacaaaaaaaaaaaggcataaatata |
43587888 |
T |
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| Q |
165 |
gattctaccttgtatctttctcccgaataatggtgggagaaaatatatcaaactcaagagacaatagtttcgacttggctttaaaagttagagcaggttt |
264 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43587889 |
gattctaccttgtatatttctcccgaataatggtgggagaaaatatatcaaactcaagagacaatagtttcgacttggctttaaaagttagagcaggttt |
43587988 |
T |
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| Q |
265 |
cacatccgacataatctc |
282 |
Q |
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|||||||||||||||||| |
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| T |
43587989 |
cacatccgacataatctc |
43588006 |
T |
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