View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16791_low_2 (Length: 835)

Name: NF16791_low_2
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16791_low_2
NF16791_low_2
[»] chr7 (8 HSPs)
chr7 (19-828)||(21182013-21182815)
chr7 (629-828)||(21205090-21205289)
chr7 (629-828)||(21853317-21853516)
chr7 (50-194)||(21204806-21204950)
chr7 (39-170)||(21852345-21852476)
chr7 (61-195)||(21209070-21209204)
chr7 (684-737)||(22636196-22636249)
chr7 (395-424)||(32122296-32122325)
[»] chr1 (1 HSPs)
chr1 (367-423)||(26631688-26631746)
[»] chr3 (1 HSPs)
chr3 (354-414)||(30790779-30790836)
[»] chr8 (1 HSPs)
chr8 (382-419)||(42205349-42205386)
[»] chr6 (1 HSPs)
chr6 (366-414)||(20809087-20809135)
[»] chr4 (1 HSPs)
chr4 (366-423)||(33844164-33844221)


Alignment Details
Target: chr7 (Bit Score: 752; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 19 - 828
Target Start/End: Original strand, 21182013 - 21182815
Alignment:
Q  19 tacataagctaattatactctttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182013 tacataagctaattatactctttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggac 21182112  T
Q  119 caaatgtttctgaagcctacacaatcaatggacttccagggccattgtataactgctctaaaaaaggtatcaagtgcagataaatatatattctaggaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||    
T  21182113 caaatgtttctgaagcctacacaatcaatggacttccagggccattgtataactgctctaaaaaaggtatcaagtgcagataaatatatcttattgaaat 21182212  T
Q  219 aatccccaattattaaaagaatgaagcaaataattcctaaaattgaaaatatgaagccttaaacgtaactacttataatataatagttgtgttatttgaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21182213 aatccccaattattaaaagaatgaagcaaataattcctaaaattgaaaatatgaagccttaaacgtaactactcataatataatagttgtgttatttgaa 21182312  T
Q  319 catcaacgtgcaaacaccgtgtgtgaaactgtacgtgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacacaaaaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182313 catcaacgtgcaaacaccgtgtgtgaaactgtacgtgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacacaaaaa 21182412  T
Q  419 tcaaagcatgctgtattcgacatccaagttttatatcaaaattcatttttctaatacagtattccactttatcacaaaagcaaatactaaaacacgcact 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21182413 tcaaagcatgctgtattcgacatccaagttttatatcaaaattcatttttctaatacagtattccactttatcacaaaagcaaatactaaaacaggcact 21182512  T
Q  519 caacaagtggacattcactagattggacaccaatttctacaaaagcatatagaattctttatgaaacggtatcagcaatatggttttaatcattttaaga 618  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  21182513 caacaagtggacattcactagattagacaccaatttctacaaaagcatatagaattctttatgaaacggtatcagcaatatggttttaatcatttt---- 21182608  T
Q  619 tgcaactctttacagatacattcaagctaaaggtgaagcctggaaagacttaccttctacgtttgatcaatgctgcactaaatgatgagttattcttcag 718  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182609 ---aactctttacagatacattcaagctaaaggtgaagcctggaaagacttaccttctacgtttgatcaatgctgcactaaatgatgagttattcttcag 21182705  T
Q  719 cgttgcaaatcacaccctcaaagttgttgaagtcgacgctatttacgtgaaaccttttgagactaacaccatccttattgcccctggccaaaccactaat 818  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182706 cgttgcaaatcacaccctcaaagttgttgaagccgacgctatttacgtgaaaccttttgagactaacaccatccttattgcccctggccaaaccactaat 21182805  T
Q  819 gttcttctca 828  Q
    ||||||||||    
T  21182806 gttcttctca 21182815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 629 - 828
Target Start/End: Original strand, 21205090 - 21205289
Alignment:
Q  629 tacagatacattcaagctaaaggtgaagcctggaaagacttaccttctacgtttgatcaatgctgcactaaatgatgagttattcttcagcgttgcaaat 728  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||| ||||||||| ||||||||    
T  21205090 tacagatacattcaaactaaaggtgaagcctggaaaaacctaccttctacgtttgatcaacgctgcgctgaatgatgagttgttcttcagcattgcaaat 21205189  T
Q  729 cacaccctcaaagttgttgaagtcgacgctatttacgtgaaaccttttgagactaacaccatccttattgcccctggccaaaccactaatgttcttctca 828  Q
    || |||||||||||||||||||  || |||||||| || |||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||    
T  21205190 cataccctcaaagttgttgaagcagatgctatttatgttaaaccttttgagacaaacaccatctatattgcccctggccaaaccactaatgttcttctca 21205289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 629 - 828
Target Start/End: Original strand, 21853317 - 21853516
Alignment:
Q  629 tacagatacattcaagctaaaggtgaagcctggaaagacttaccttctacgtttgatcaatgctgcactaaatgatgagttattcttcagcgttgcaaat 728  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||| || |||||||| || || |||||||||||| | |||||     
T  21853317 tacagatacattcaagctaaaggtgaagccaagaaagacttaccttcttcgtttaatcaacgccgcactaaacgacgaattattcttcagcatagcaaac 21853416  T
Q  729 cacaccctcaaagttgttgaagtcgacgctatttacgtgaaaccttttgagactaacaccatccttattgcccctggccaaaccactaatgttcttctca 828  Q
    ||||| |||| |||||||||||  || ||  |||| |  ||||||||||  || ||||| ||||| ||||| ||||| ||||||||||||||||||||||    
T  21853417 cacactctcacagttgttgaagcagatgcagtttatgcaaaaccttttgtcacaaacacaatcctaattgcacctggacaaaccactaatgttcttctca 21853516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 21204806 - 21204950
Alignment:
Q  50 ttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatgg 149  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||||||| |||||    
T  21204806 ttttaggtgaatggttcaatgcagatcctgaggcaatcatagcacaagctctccaaactggtggaggaccaaatgtctctgatgcatacacaattaatgg 21204905  T
Q  150 acttccagggccattgtataactgctctaaaaaaggtatcaagtg 194  Q
    ||||||||||||||||||||| || |||   || |||||||||||    
T  21204906 acttccagggccattgtataattgttctgctaatggtatcaagtg 21204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 21852345 - 21852476
Alignment:
Q  39 tttaattttggttttaggagaatggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctac 138  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||| || ||     
T  21852345 tttaattttggttttaggtgaatggttcaatacagatcctgaggcaatcattgcacaagctctacaaactggtggaggaccaaatgtctctgatgcatat 21852444  T
Q  139 acaatcaatggacttccagggccattgtataa 170  Q
    |||||||||||||||||||| |||||||||||    
T  21852445 acaatcaatggacttccaggaccattgtataa 21852476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 21209070 - 21209204
Alignment:
Q  61 tggttcaatgcagatactgaggccatcatagcacaagccctgcaaactgggggaggaccaaatgtttctgaagcctacacaatcaatggacttccagggc 160  Q
    ||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||||||||     
T  21209070 tggttcaatgcagatcctgaggcaatcattgcacaagccctccaaactggtggaggaccaaatgtctctgatgcatacacaattaattgacttccaggga 21209169  T
Q  161 cattgtataactgctctaaaaaaggtatcaagtgc 195  Q
    |||||||||| || |||   |||||| ||||||||    
T  21209170 cattgtataattgttctgctaaaggtttcaagtgc 21209204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 737
Target Start/End: Complemental strand, 22636249 - 22636196
Alignment:
Q  684 atcaatgctgcactaaatgatgagttattcttcagcgttgcaaatcacaccctc 737  Q
    |||||||||||||| ||||||||| | ||||| ||| |||| ||||||||||||    
T  22636249 atcaatgctgcactcaatgatgagatgttctttagcattgctaatcacaccctc 22636196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 424
Target Start/End: Original strand, 32122296 - 32122325
Alignment:
Q  395 acacatttaaaaaatacacaaaaatcaaag 424  Q
    ||||||||||||||||||||||||||||||    
T  32122296 acacatttaaaaaatacacaaaaatcaaag 32122325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 26631688 - 26631746
Alignment:
Q  367 ctcttactttttattttctacaacttaaacacatttaaaaaatacac--aaaaatcaaa 423  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||  ||||||||||    
T  26631688 ctcttactttttatattctacaacttacacacattttaaaaatacacgtaaaaatcaaa 26631746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 30790836 - 30790779
Alignment:
Q  354 tgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacaca 414  Q
    ||||||||||||| ||||   |||||| |||||||||||| ||||||||||||||||||||    
T  30790836 tgtttatctctatttctt---ttttatcttctacaacttacacacatttaaaaaatacaca 30790779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 42205386 - 42205349
Alignment:
Q  382 ttctacaacttaaacacatttaaaaaatacacaaaaat 419  Q
    |||||||||||| |||||||||||||||||||||||||    
T  42205386 ttctacaacttacacacatttaaaaaatacacaaaaat 42205349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 20809135 - 20809087
Alignment:
Q  366 tctcttactttttattttctacaacttaaacacatttaaaaaatacaca 414  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||    
T  20809135 tctcttactttttatcttttacaacatacacacatttaaaaaatacaca 20809087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 33844164 - 33844221
Alignment:
Q  366 tctcttactttttattttctacaacttaaacacatttaaaaaatacacaaaaatcaaa 423  Q
    ||||||||| ||||| | ||||||||||||  ||||| ||||||||||||||| ||||    
T  33844164 tctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa 33844221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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