View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_21 (Length: 305)
Name: NF16791_low_21
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 53510198 - 53509910
Alignment:
| Q |
1 |
agactgtatttcctaatgctaagcctaacataaattctgtatccaaatatcctgaaaagggtccatcagtgaaaccaaaaatgggggatgctctgctgtt |
100 |
Q |
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| T |
53510198 |
agactgtatttcctaatgctaagcctaacataaattctgtatccaaatatcctgaaaagggtctatcagtgaaaccaaaaatgggtgatgctctgctgtt |
53510099 |
T |
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| Q |
101 |
tcagagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaatatgtatacatt |
200 |
Q |
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| T |
53510098 |
tcggagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaatatgtatacatt |
53509999 |
T |
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| Q |
201 |
ctctattaaacacaatctatagattaatgagttggatctaaatannnnnnnaatgttgaattttagtagttagtttattagataaatat |
289 |
Q |
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| T |
53509998 |
ctctattaaacacaatctatagattaatgagttggatctaaatattttttcaatgttgaattttagtagttagtttattagataaatat |
53509910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 53513807 - 53513564
Alignment:
| Q |
1 |
agactgtatttcctaatgctaagcctaacataaattctgtatccaaatatcctgaaaagggtccatcagtgaaaccaaaaatgggggatgctctgctgtt |
100 |
Q |
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| T |
53513807 |
agactgtatttcctgatgctcagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacgctctgctgtt |
53513708 |
T |
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| Q |
101 |
tcagagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaatatgtatacatt |
200 |
Q |
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| T |
53513707 |
ttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaattattaaaaactgtaaatggttcaaccctaaaatatgcatatata |
53513608 |
T |
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| Q |
201 |
ctctattaaacacaatctatagattaatgagttggatctaaata |
244 |
Q |
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| T |
53513607 |
ctctattaaaaacaatcaatagattaatcagttggatccaaata |
53513564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 53524107 - 53523951
Alignment:
| Q |
1 |
agactgtatttcctaatgctaagcctaacataaattctgtatccaaatatc---ctgaaaagggtccatcagtgaaaccaaaaatgggggatgctctgct |
97 |
Q |
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| T |
53524107 |
agactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtttagtagtgaaaccgaaaatgggcgatgctctgct |
53524008 |
T |
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| Q |
98 |
gtttcagagcatgaagccagatggcacacttgatacttctagtttacacggttagaa |
154 |
Q |
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| T |
53524007 |
gttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaa |
53523951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 53547663 - 53547567
Alignment:
| Q |
56 |
aaagggtccatcagtgaaaccaaaaatgggggatgctctgctgtttcagagcatgaagccagatggcacacttgatacttctagtttacacggttag |
152 |
Q |
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| T |
53547663 |
aaagggtctatcactgaaaccaaaaatgggtgatgctctgctgttttggagcatgaggccagatgccacactagatgcatccagtttacacggttag |
53547567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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