View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16791_low_24 (Length: 276)
Name: NF16791_low_24
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 22664456 - 22664340
Alignment:
| Q |
16 |
aatatccaatgtgccctatccaaagttaatatccaatatgtcctactttgcaaaatctcctttcatagcgccatctgagatggcaccatctgtccttcaa |
115 |
Q |
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| T |
22664456 |
aatatccaatgtgccctatccaaaattaatatccaatatgtcctactttgcaaaatctccttttatagcgccatctgagatgacaccatctttccttcag |
22664357 |
T |
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| Q |
116 |
gatgactccatctcaga |
132 |
Q |
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| T |
22664356 |
gatgactccatctcaga |
22664340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 32513060 - 32513131
Alignment:
| Q |
74 |
cctttcatagcgccatctgagatggcaccatctgtccttcaagatgactccatctcagatggtgccatcctac |
146 |
Q |
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| T |
32513060 |
ccttacatagctccatctgagatggcaccatgt-tccttcatgatggctccatctcagatggcgccatcctac |
32513131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 41520493 - 41520540
Alignment:
| Q |
209 |
gctccttcaatcttcaattttaattaaactcctacattgttcgaacaa |
256 |
Q |
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| T |
41520493 |
gctcctccaatctttaattttaattaaactcctacattgttcgaacaa |
41520540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 32514169 - 32514135
Alignment:
| Q |
179 |
ggcttattaattaatacctcctttaggatagctcc |
213 |
Q |
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| T |
32514169 |
ggcttattaattaatatctcctttaggatagctcc |
32514135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 30328420 - 30328346
Alignment:
| Q |
71 |
tctcctttcatagcgccatctgagatggcaccatctgtccttcaagatgactccatctcagatggtgccatcctac |
146 |
Q |
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| T |
30328420 |
tctccttacatggctccatctgagatggcactatca-tcctttaggatgactccatctcagatggtgccatcctac |
30328346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 30328082 - 30328141
Alignment:
| Q |
86 |
ccatctgagatggcaccatctgtccttcaagatgactccatctcagatggtgccatcctac |
146 |
Q |
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| T |
30328082 |
ccatctgatatggcaccatc-gtccttcaggatggctctatctcagatgccgccatcctac |
30328141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 1552457 - 1552328
Alignment:
| Q |
18 |
tatccaatgtgcccta--tccaaagttaatatccaatatgtcctactttgcaaaatctcctttcatagcgccatctgagatggcaccatctgtccttcaa |
115 |
Q |
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|||||||||||||||| | |||| | ||||| | |||| |||||||||||| | ||||| |||||| |||||| |||||||||||| | ||||||| |
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| T |
1552457 |
tatccaatgtgccctactttcaaaataaatattccatataccctactttgcaatttttccttacatagctccatctaagatggcaccatgtatccttcag |
1552358 |
T |
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| Q |
116 |
gatgactccatctcagatggtgccatccta |
145 |
Q |
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| T |
1552357 |
gatagctccatctcatatggcgccatccta |
1552328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 27049019 - 27049066
Alignment:
| Q |
209 |
gctccttcaatcttcaattttaattaaactcctacattgttcgaacaa |
256 |
Q |
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|||||| ||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
27049019 |
gctcctccaatcttcaattttaattaaacttctacactgttcgaacaa |
27049066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 43850848 - 43850896
Alignment:
| Q |
86 |
ccatctgagatggcaccatctgtccttcaagatgactccatctcagatgg |
135 |
Q |
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| T |
43850848 |
ccatctgagatggcaccatca-tctttcaggatgactccatctcagatgg |
43850896 |
T |
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