View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16791_low_3 (Length: 689)
Name: NF16791_low_3
Description: NF16791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16791_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Original strand, 35264470 - 35265126
Alignment:
| Q |
18 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
35264470 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagtaacaaacaaattggtcagatatttaaaaaaattggtaaaat |
35264569 |
T |
|
| Q |
118 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35264570 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgaaaaaaaggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagga |
35264669 |
T |
|
| Q |
218 |
tcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggagaaaggaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35264670 |
tcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggagaaaggaac |
35264769 |
T |
|
| Q |
318 |
cgattccaaattctctaagtcacaaggacatcagaattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgcacccaaggtggtagct |
417 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35264770 |
cgattccaaattccctaagtcacaaggacatcagaattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgaacccaaggtggtagct |
35264869 |
T |
|
| Q |
418 |
actagccatggattttgatatatggtatggcctataacactacaccaactattcttcactaacttggattagaaggtagcaaaagtcagttaattcttag |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35264870 |
actagccatggattttgatatatggtatggcctataacactacaccaactattcttcactaacttggattagaagatagcaaaagtcagttaattcttag |
35264969 |
T |
|
| Q |
518 |
cagatgaggaaagagcatattcaacctcttggttattctttttgaatgccctaaaa-ccatcaactgtaattgatcactaacatgggaaatagaattatt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35264970 |
aagatgaggaaagagcatattcaacctcttagttattctttttgaatgccctaaaacccatcaactgtaattgatcactaacatgggaaatagaattatt |
35265069 |
T |
|
| Q |
617 |
caagcccgtaaaaaaggatatggctctgtttggtaaaaaatagtgtaaagcttatag |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35265070 |
caagcccgtaaaaaaggatatggctctgtttggtaaaaaatagtgtaaagcttatag |
35265126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 210 - 418
Target Start/End: Original strand, 35272032 - 35272235
Alignment:
| Q |
210 |
aagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggag |
309 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
35272032 |
aagaaggatcttgggtctccaagctgaacttggatgcaaaagatagttgggtgaagagcactgatatgtgttgctgatacttagctgaagtaatatgg-- |
35272129 |
T |
|
| Q |
310 |
aaaggaaccgattccaaattctctaagtcacaaggacatcag-aattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgcacccaag |
408 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||| | |||||| |||||||||||||||| ||||| | |||| |||||||||||| |||| || |
|
|
| T |
35272130 |
--aggaacagattccaaat--tctaagtcacagggacatcggaaatttttgcaagcacttgtttgactgaacgttctttgaatttgggtttgaacccgag |
35272225 |
T |
|
| Q |
409 |
gtggtagcta |
418 |
Q |
| |
|
||||| |||| |
|
|
| T |
35272226 |
gtggttgcta |
35272235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 468 - 622
Target Start/End: Original strand, 35272253 - 35272409
Alignment:
| Q |
468 |
attcttcactaacttggattagaaggtagcaaaagtcagttaattcttagcagatgaggaaagagcatattcaacctcttggttattctttttgaa-tgc |
566 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| || ||||||| || |
|
|
| T |
35272253 |
attcttcactaactttgattagaagatagcaaaagtcagttaattcttagcagatgaggaaagagcacactcaacctctttgttactccttttgaattgg |
35272352 |
T |
|
| Q |
567 |
ccta-aaaccatcaactgtaattgatcactaacatgggaaatagaattattcaagcc |
622 |
Q |
| |
|
|||| || |||||||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
35272353 |
cctagaacccatcaacggtaattgatcactaacatggtaaatagaatcattcaagcc |
35272409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 35271802 - 35272004
Alignment:
| Q |
20 |
gaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaatga |
119 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||| | |||||||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
35271802 |
gaacatgtgtagaaataacaagtcttaaaataagaactatagctttagttgtaaagtaacaaacaaattggtctaatatttaaaaaatttggtaaaatga |
35271901 |
T |
|
| Q |
120 |
tgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaaaccacagcgttacagaagaaggatc |
219 |
Q |
| |
|
|||||||||||| | |||||||| |||||| ||||| |||||| | ||||||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
35271902 |
tgcattcaaaaatatataggttccgttgccaaagcaattaggatcaaaaaaggaaagtctgcagattaagcaaaaactgcagcgctacagaagaaggatc |
35272001 |
T |
|
| Q |
220 |
ttg |
222 |
Q |
| |
|
||| |
|
|
| T |
35272002 |
ttg |
35272004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 35148463 - 35148504
Alignment:
| Q |
47 |
aaataagaactgcatctttagttgtaaagcaacaaacaaatt |
88 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
35148463 |
aaataggaactgcgtctttagttgtaaggcaacaaacaaatt |
35148504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 35209432 - 35209480
Alignment:
| Q |
258 |
gagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatg |
306 |
Q |
| |
|
|||||||||||| || || || |||||||||||||||||||||||||| |
|
|
| T |
35209432 |
gagtgaagagcatggatacatgctgctgatacttagctgaagtgatatg |
35209480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 36778252 - 36778578
Alignment:
| Q |
18 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaat |
117 |
Q |
| |
|
|||||||| |||||| | |||||||||| |||||||||| || |||||||||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
36778252 |
atgaacatatgtagaaataacaagtcttaaaataagaaccacagctttagttgtaaagtaacaaacaaattggtctgatatttaaaaaatttggtaaaat |
36778351 |
T |
|
| Q |
118 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagga |
217 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||| |||||| | ||||||||||| ||||||||| | || || ||||||||||||| |
|
|
| T |
36778352 |
gatgcattcaaaaataaataggtacggttaccacagcaattaggatcaaaaaaggaaagtctgcagatgaagcaaaagctgcaacgctacagaagaagga |
36778451 |
T |
|
| Q |
218 |
tcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggagaaaggaac |
317 |
Q |
| |
|
|| ||| ||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| ||||||||||| | ||||||||||| |||||| |
|
|
| T |
36778452 |
tcctggggctccaagctgaacttggatgcaaaagatagttgggtgaagagcatggatatgtgtttctgatacttaggtaaagtgatatgg----aggaac |
36778547 |
T |
|
| Q |
318 |
cgattccaaattctctaagtcacaaggacatca |
350 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |
|
|
| T |
36778548 |
agattccaaat--tctaagtcacagggacatca |
36778578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University